HL_6SPD_063

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_063 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1632

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6SPD|1|A|C|2538
6SPD|1|A|U|2539
6SPD|1|A|G|2540
6SPD|1|A|U|2541
6SPD|1|A|U|2542
6SPD|1|A|C|2543
6SPD|1|A|G|2544

Current chains

Chain A

23S ribosomal RNA

Nearby chains