HL_6SPD_067

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6SPD|1|A|G|2737, 6SPD|1|A|C|2741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPD_067 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1164

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6SPD|1|A|C|2731
6SPD|1|A|U|2732
6SPD|1|A|G|2733
6SPD|1|A|A|2734
6SPD|1|A|A|2735
6SPD|1|A|A|2736
6SPD|1|A|G|2737
6SPD|1|A|C|2738
6SPD|1|A|A|2739
6SPD|1|A|U|2740
6SPD|1|A|C|2741
6SPD|1|A|U|2742
6SPD|1|A|A|2743
6SPD|1|A|A|2744
6SPD|1|A|G|2745

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain G

50S ribosomal protein L6