HL_6SPE_034

3D structure

PDB id

6SPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUCGGG

Length

7 nucleotides

Bulged bases

6SPE|1|a|U|1130, 6SPE|1|a|G|1133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPE_034 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.3266

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

6SPE|1|a|C|1128
6SPE|1|a|C|1129
6SPE|1|a|U|1130
6SPE|1|a|C|1131
6SPE|1|a|G|1132
6SPE|1|a|G|1133
6SPE|1|a|G|1134

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9