HL_6SPF_011

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUGAUAGCC

Length

9 nucleotides

Bulged bases

6SPF|1|A|G|323, 6SPF|1|A|A|324, 6SPF|1|A|U|325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_011 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.1312

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6SPF|1|A|G|321
6SPF|1|A|U|322
6SPF|1|A|G|323
6SPF|1|A|A|324
6SPF|1|A|U|325
6SPF|1|A|A|326
6SPF|1|A|G|327
6SPF|1|A|C|328
6SPF|1|A|C|329

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24