RNA 3D Hub //

6SPF Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6SPF_0011/A/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_6SPF_0021/A/87:96No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_6SPF_0031/A/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_6SPF_0041/A/137:142No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_6SPF_0051/A/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_6SPF_0061/A/194:201No text annotation
homologous
HL_4WF9_006
HL_30068.2
HL_6SPF_0071/A/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_6SPF_0081/A/246:252No text annotation
homologous
HL_7RQB_008
NA
HL_6SPF_0091/A/299:306T-loop with 2 stacked bulged bases
homologous
HL_4WF9_010
HL_01609.3
HL_6SPF_0101/A/313:317No text annotation
homologous
HL_4WF9_011
HL_75660.5
HL_6SPF_0111/A/321:329T-loop with unstacked turn
homologous
HL_7RQB_012
NA
HL_6SPF_0121/A/373:383No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_6SPF_0131/A/401:408Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_6SPF_0141/A/453:458GNRA
homologous
HL_7RQB_015
NA
HL_6SPF_0151/A/478:484GNRA
homologous
HL_5J7L_148
HL_37824.8
HL_6SPF_0161/A/533:541No text annotation
HL_6SPF_0171/A/556:565T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
HL_28252.9
HL_6SPF_0181/A/601:607No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_6SPF_0191/A/619:624GNRA
homologous
HL_5J7L_152
HL_37824.8
HL_6SPF_0201/A/631:637No text annotation
homologous
HL_7RQB_021
NA
HL_6SPF_0211/A/702:709No text annotation
homologous
HL_7RQB_022
NA
HL_6SPF_0221/A/734:743No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_6SPF_0231/A/769:775UNCG variation
geometric
HL_2NUE_001
HL_53890.2
HL_6SPF_0241/A/816:821No text annotation
homologous
HL_5J7L_157
HL_55195.3
HL_6SPF_0251/A/869:886No text annotation
HL_6SPF_0261/A/945:952GNRA
homologous
HL_4WF9_027
HL_37824.8
HL_6SPF_0271/A/968:975No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_6SPF_0281/A/1032:1103No text annotation
HL_6SPF_0971/A/1160:1167No text annotation
geometric
HL_2Y9H_005
HL_86870.2
HL_6SPF_0301/A/1209:1214GNRA
homologous
HL_5J7L_164
HL_37824.8
HL_6SPF_0311/A/1268:1276T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.9
HL_6SPF_0321/A/1311:1317Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_6SPF_0331/A/1350:1355GNRA
homologous
HL_5J7L_167
HL_37824.8
HL_6SPF_0341/A/1376:1385No text annotation
homologous
HL_7RQB_036
NA
HL_6SPF_0351/A/1437:1448UNCG variation
geometric
HL_5J7L_200
HL_08100.1
HL_6SPF_0361/A/1479:1485No text annotation
homologous
HL_7RQB_038
NA
HL_6SPF_0381/A/1555:1558Mini UNCG
homologous
HL_7A0S_039
HL_48778.2
HL_6SPF_0391/A/1602:1609No text annotation
homologous
HL_7RQB_040
NA
HL_6SPF_0401/A/1620:1626GNRA
homologous
HL_5J7L_174
HL_37824.8
HL_6SPF_0411/A/1681:1686UNCG
geometric
HL_4V9F_044
HL_34617.5
HL_6SPF_1081/A/1714:1720No text annotation
HL_6SPF_0431/A/1739:1743No text annotation
homologous
HL_7RQB_044
NA
HL_6SPF_0441/A/1764:1774No text annotation
homologous
HL_5J7L_178
HL_01962.2
HL_6SPF_0451/A/1793:1798GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_6SPF_0461/A/1855:1860GNRA variation
homologous
HL_5J7L_180
HL_37824.8
HL_6SPF_0471/A/1896:1909No text annotation
HL_6SPF_0481/A/1936:1944No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_6SPF_0491/A/2014:2023No text annotation
homologous
HL_4WF9_047
HL_61996.3
HL_6SPF_0981/A/2130:2135Mini UNCG
geometric
HL_8C3A_198
NA
HL_6SPF_0511/A/2196:2202No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_6SPF_0521/A/2235:2243No text annotation
homologous
HL_4WF9_049
HL_85367.2
HL_6SPF_0531/A/2251:2263No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_6SPF_0991/A/2284:2308No text annotation
HL_6SPF_0541/A/2286:2304No text annotation
HL_6SPF_0551/A/2311:2318Pseudoknot geometry
homologous
HL_4WF9_052
HL_93324.4
HL_6SPF_0561/A/2342:2349GNRA with extra cWW
homologous
HL_4WF9_053
HL_04259.3
HL_6SPF_1001/A/2359:2368No text annotation
HL_6SPF_0571/A/2361:2366GNRA
homologous
HL_4WF9_054
HL_37824.8
HL_6SPF_0581/A/2391:2400No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_6SPF_0591/A/2458:2466No text annotation
homologous
HL_5J7L_193
HL_32735.2
HL_6SPF_0601/A/2515:2522GNRA variation
homologous
HL_5J7L_194
HL_31585.4
HL_6SPF_0611/A/2538:2544No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_6SPF_0621/A/2581:2586GNRA
homologous
HL_5J7L_196
HL_37824.8
HL_6SPF_0631/A/2645:2650GNRA
geometric
HL_4V9F_070
HL_37824.8
HL_6SPF_0641/A/2688:2693Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_6SPF_0651/A/2732:2746No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_6SPF_0661/A/2806:2814No text annotation
homologous
HL_7RQB_068
NA
HL_6SPF_0671/A/2825:2867No text annotation
HL_6SPF_0681/B/38:44No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_6SPF_0691/B/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_6SPF_0701/a/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_6SPF_1011/a/75:88No text annotation
HL_6SPF_0711/a/79:84No text annotation
HL_6SPF_0721/a/152:157GNRA
homologous
HL_5J7L_003
HL_37824.8
HL_6SPF_0731/a/180:185No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_6SPF_1021/a/197:208No text annotation
HL_6SPF_0741/a/201:206No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_6SPF_0751/a/253:261GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_6SPF_0761/a/290:295GNRA
homologous
HL_5J7L_007
HL_37824.8
HL_6SPF_0771/a/314:327No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_6SPF_0781/a/336:341UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_6SPF_0791/a/373:378GNRA
homologous
HL_4LFB_010
HL_37824.8
HL_6SPF_1041/a/451:471No text annotation
HL_6SPF_0811/a/452:469No text annotation
HL_6SPF_0821/a/516:521GNRA variation
geometric
HL_1JID_001
HL_37824.8
HL_6SPF_0831/a/611:617GNRA-like with tWH
homologous
HL_4LFB_014
HL_10453.3
HL_6SPF_0851/a/720:725GNRA
geometric
HL_4Y1M_002
HL_37824.8
HL_6SPF_0861/a/779:791No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_6SPF_0871/a/834:840No text annotation
HL_6SPF_0881/a/856:861GNRA
homologous
HL_4LFB_019
HL_37824.8
HL_6SPF_0891/a/891:896GNRA
homologous
HL_4LFB_020
HL_37824.8
HL_6SPF_0901/a/1022:1027No text annotation
HL_6SPF_0911/a/1070:1075GNRA
homologous
HL_5J7L_023
HL_37824.8
HL_6SPF_1091/a/1083:1090T-loop related
homologous
HL_5J7L_024
HL_77436.5
HL_6SPF_0931/a/1155:1169No text annotation
HL_6SPF_0941/a/1253:1270No text annotation
HL_6SPF_0951/a/1443:1448GNRA with GA tSW pair
geometric
HL_4ZT0_006
NA
HL_6SPF_0961/a/1509:1514GNRA
homologous
HL_4LFB_032
HL_37824.8

Problematic loops

#loop idProblemSequence
HL_6SPF_029No text annotation
HL_6SPF_037No text annotation
HL_6SPF_042No text annotation
HL_6SPF_050No text annotation
HL_6SPF_103tRNA D-loop
HL_6SPF_080No text annotation
HL_6SPF_105tRNA anticodon loop
HL_6SPF_084No text annotation
HL_6SPF_106No text annotation
HL_6SPF_092No text annotation
HL_6SPF_107No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6SPF_0011/A/24:30,
1/A/501:507		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
IL_04021.2
IL_6SPF_0021/A/36:37,
1/A/433:435		Single bulged A
homologous
IL_5J7L_246
IL_31462.7
IL_6SPF_1531/A/43:44,
1/A/425:427		Minor groove platform
homologous
IL_7A0S_003
IL_51454.3
IL_6SPF_0041/A/81:85,
1/A/98:105		Kink-turn
homologous
IL_4WF9_004
IL_01488.3
IL_6SPF_0051/A/183:184,
1/A/212:214		Single stack bend
homologous
IL_4WF9_007
IL_90729.1
IL_6SPF_0061/A/188:194,
1/A/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_6SPF_0071/A/239:245,
1/A/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_6SPF_0081/A/279:282,
1/A/346:349		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_77658.1
IL_6SPF_0091/A/287:289,
1/A/337:341		No text annotation
homologous
IL_4WF9_014
IL_69440.3
IL_6SPF_0101/A/297:299,
1/A/306:308		Isolated non-canonical cWW pair
geometric
IL_3BNR_007
IL_28037.2
IL_6SPF_0111/A/472:475,
1/A/487:500		No text annotation
geometric
IL_5J7L_255
IL_81516.2
IL_6SPF_0121/A/527:530,
1/A/544:547		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_6SPF_0131/A/554:556,
1/A/565:567		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
IL_07785.1
IL_6SPF_0141/A/596:600,
1/A/608:612		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_6SPF_0151/A/662:664,
1/A/796:798		Isolated non-canonical cWW pair
geometric
IL_4KNQ_004
NA
IL_6SPF_0161/A/664:668,
1/A/789:796		tHW-tHW cross-strand stack
homologous
IL_7RQB_018
NA
IL_6SPF_0171/A/687:688,
1/A/753:755		Single bulged A
geometric
IL_4V9F_025
IL_31462.7
IL_6SPF_0181/A/692:693,
1/A/718:720		Single bulged G
geometric
IL_5J7L_262
IL_00225.14
IL_6SPF_0191/A/693:697,
1/A/714:718		Triple sheared
homologous
IL_7RQB_021
NA
IL_6SPF_0201/A/728:730,
1/A/747:748		Major groove platform
homologous
IL_4WF9_026
IL_48076.6
IL_6SPF_0211/A/731:733,
1/A/744:746		Isolated non-canonical cWW pair
homologous
IL_7A0S_020
IL_87907.2
IL_6SPF_0221/A/765:767,
1/A/777:781		Multiple bulged bases
geometric
IL_7RQB_023
NA
IL_6SPF_0231/A/834:837,
1/A/919:924		No text annotation
IL_6SPF_0241/A/839:840,
1/A/915:917		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_6SPF_0251/A/845:851,
1/A/904:910		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
IL_29198.2
IL_6SPF_0261/A/851:852,
1/A/902:904		Minor groove platform
homologous
IL_7RQB_028
NA
IL_6SPF_0271/A/853:858,
1/A/897:901		No text annotation
geometric
IL_4V9F_035
IL_06691.1
IL_6SPF_0281/A/859:861,
1/A/894:896		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_6SPF_1711/A/863:868,
1/A/887:892		No text annotation
IL_6SPF_0301/A/984:986,
1/A/1150:1151		Single bulged C
homologous
IL_7RQB_035
NA
IL_6SPF_0311/A/988:992,
1/A/1144:1148		UAA/GAN
homologous
IL_5J7L_277
IL_38507.2
IL_6SPF_0321/A/994:1001,
1/A/1141:1142		SSU/LSU pseudoknot
homologous
IL_5J7L_278
IL_41203.4
IL_6SPF_0331/A/1001:1003,
1/A/1140:1141		Single bulged U
geometric
IL_5J7L_279
IL_89505.4
IL_6SPF_0341/A/1008:1014,
1/A/1130:1135		Kink-turn related
homologous
IL_4WF9_039
IL_57188.5
IL_6SPF_0351/A/1014:1021,
1/A/1113:1130		No text annotation
IL_6SPF_0361/A/1021:1024,
1/A/1111:1113		Isolated non-canonical cWW pair
homologous
IL_4WF9_041
IL_57744.1
IL_6SPF_0371/A/1027:1031,
1/A/1104:1108		No text annotation
geometric
IL_5TBW_121
NA
IL_6SPF_0381/A/1183:1185,
1/A/1234:1237		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.3
IL_6SPF_0391/A/1189:1193,
1/A/1227:1230		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_6SPF_0401/A/1195:1202,
1/A/1221:1225		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_6SPF_0411/A/1249:1256,
1/A/1998:2004		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_6SPF_0421/A/1297:1300,
1/A/1593:1594		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_6SPF_0431/A/1306:1310,
1/A/1318:1320		C-loop
homologous
IL_7RQB_051
NA
IL_6SPF_0441/A/1338:1342,
1/A/1363:1367		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_6SPF_0451/A/1344:1348,
1/A/1357:1361		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_6SPF_0461/A/1401:1404,
1/A/1571:1578		No text annotation
IL_6SPF_0471/A/1404:1408,
1/A/1567:1571		UAA/GAN
geometric
IL_5J7L_295
IL_38507.2
IL_6SPF_0481/A/1419:1422,
1/A/1547:1551		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_6SPF_0491/A/1424:1427,
1/A/1541:1545		tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_6SPF_1551/A/1455:1465,
1/A/1500:1511		No text annotation
IL_6SPF_0501/A/1467:1469,
1/A/1494:1498		No text annotation
IL_6SPF_0511/A/1469:1471,
1/A/1493:1494		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_6SPF_0521/A/1471:1472,
1/A/1491:1493		Single stack bend
geometric
IL_7KGA_003
IL_90729.1
IL_6SPF_0531/A/1476:1478,
1/A/1486:1487		Single bulged A
homologous
IL_5J7L_302
IL_31462.7
IL_6SPF_0541/A/1513:1516,
1/A/1532:1536		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_6SPF_0551/A/1641:1646,
1/A/1991:1993		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_6SPF_0561/A/1653:1655,
1/A/1982:1984		Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_6SPF_0571/A/1656:1659,
1/A/1980:1981		Major groove platform; stack outside cWW
geometric
IL_5J7L_306
IL_50694.7
IL_6SPF_1571/A/1656:1664,
1/A/1977:1981		No text annotation
homologous
IL_5J7L_386
IL_22854.4
IL_6SPF_0581/A/1659:1664,
1/A/1977:1980		Intercalated tWH
homologous
IL_5J7L_307
IL_76758.2
IL_6SPF_0591/A/1676:1681,
1/A/1686:1692		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
IL_47346.2
IL_6SPF_0601/A/1708:1712,
1/A/1722:1727		No text annotation
IL_6SPF_0611/A/1757:1758,
1/A/1967:1969		Single bulged A
homologous
IL_5J7L_312
IL_31462.7
IL_6SPF_0621/A/1785:1791,
1/A/1800:1808		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_6SPF_0631/A/1824:1827,
1/A/1889:1890		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_6SPF_0641/A/1828:1829,
1/A/1885:1888		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.5
IL_6SPF_0651/A/1833:1836,
1/A/1880:1881		No text annotation
IL_6SPF_1581/A/1838:1847,
1/A/1869:1878		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_6SPF_0661/A/1851:1854,
1/A/1861:1865		UAA/GAN related
homologous
IL_5J7L_317
IL_77691.5
IL_6SPF_0671/A/1893:1896,
1/A/1909:1911		No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_6SPF_0681/A/1920:1921,
1/A/1951:1954		Bulged stacked bases
homologous
IL_5J7L_318
IL_22551.4
IL_6SPF_0691/A/1921:1932,
1/A/1948:1951		No text annotation
geometric
IL_4V9F_071
IL_04332.3
IL_6SPF_0701/A/2037:2039,
1/A/2604:2605		Major groove platform
homologous
IL_7RQB_078
NA
IL_6SPF_0711/A/2041:2043,
1/A/2599:2602		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_6SPF_0721/A/2054:2056,
1/A/2429:2430		Single bulged U
homologous
IL_7RQB_080
NA
IL_6SPF_0731/A/2057:2058,
1/A/2425:2428		Minor groove platform
homologous
IL_7RQB_081
NA
IL_6SPF_0741/A/2068:2070,
1/A/2223:2226		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_6SPF_0751/A/2072:2074,
1/A/2219:2221		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_6SPF_1591/A/2089:2103,
1/A/2152:2174		No text annotation
IL_6SPF_1721/A/2089:2127,
1/A/2138:2174		No text annotation
IL_6SPF_0761/A/2103:2127,
1/A/2138:2152		No text annotation
IL_6SPF_0771/A/2189:2191,
1/A/2207:2208		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_6SPF_1621/A/2282:2310,
1/A/2319:2324		No text annotation
IL_6SPF_0781/A/2284:2286,
1/A/2304:2308		No text annotation
IL_6SPF_0791/A/2388:2390,
1/A/2401:2402		Single bulged U
homologous
IL_4WF9_088
IL_89505.4
IL_6SPF_0801/A/2440:2441,
1/A/2485:2487		Single stack bend
homologous
IL_4WF9_089
IL_26793.1
IL_6SPF_0811/A/2441:2442,
1/A/2483:2485		Major groove platform
geometric
IL_7RQB_090
NA
IL_6SPF_0821/A/2444:2446,
1/A/2480:2481		Major groove platform
geometric
IL_4WF9_091
IL_48076.6
IL_6SPF_0831/A/2446:2448,
1/A/2476:2480		Major groove minor groove platform with extra cWW
homologous
IL_5J7L_337
IL_51387.3
IL_6SPF_0841/A/2453:2457,
1/A/2467:2471		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
IL_17948.2
IL_6SPF_0851/A/2494:2495,
1/A/2567:2569		Major groove platform
homologous
IL_4WF9_094
IL_07039.3
IL_6SPF_0861/A/2497:2499,
1/A/2561:2565		Isolated non-canonical cWW with bulges
homologous
IL_5J7L_340
IL_07785.1
IL_6SPF_0871/A/2499:2500,
1/A/2558:2561		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_6SPF_0881/A/2509:2510,
1/A/2527:2530		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_6SPF_0891/A/2578:2579,
1/A/2588:2590		No text annotation
IL_6SPF_0901/A/2623:2627,
1/A/2761:2769		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_6SPF_0911/A/2639:2645,
1/A/2650:2655		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.4
IL_6SPF_0921/A/2667:2671,
1/A/2712:2714		C-loop
homologous
IL_7RQB_104
NA
IL_6SPF_0931/A/2674:2678,
1/A/2705:2709		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
IL_23774.1
IL_6SPF_0941/A/2682:2683,
1/A/2698:2701		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_6SPF_0951/A/2724:2729,
1/A/2749:2754		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_6SPF_0961/A/2776:2798,
1/A/2876:2881		No text annotation
IL_6SPF_1631/B/17:22,
1/B/61:67		No text annotation
IL_6SPF_0981/B/23:28,
1/B/56:60		No text annotation
homologous
IL_7RQB_112
NA
IL_6SPF_0991/B/30:31,
1/B/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_68140.4
IL_6SPF_1001/B/34:38,
1/B/44:48		Symmetric double minor groove platform
homologous
IL_4WF9_115
IL_58103.11
IL_6SPF_1731/a/30:35,
1/a/543:547		Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_49751.4
IL_6SPF_1021/a/44:45,
1/a/390:392		Single bulged A
homologous
IL_5J7L_002
IL_31462.7
IL_6SPF_1031/a/47:52,
1/a/353:355		No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_6SPF_1041/a/54:56,
1/a/350:351		Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_6SPF_1051/a/63:69,
1/a/94:98		No text annotation
IL_6SPF_1641/a/63:75,
1/a/88:98		No text annotation
IL_6SPF_1061/a/69:75,
1/a/88:94		No text annotation
IL_6SPF_1071/a/75:77,
1/a/87:88		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_6SPF_1081/a/77:79,
1/a/84:87		No text annotation
IL_6SPF_1741/a/122:125,
1/a/225:227		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_6SPF_1101/a/126:130,
1/a/221:224		No text annotation
geometric
IL_4LFB_008
IL_64231.5
IL_6SPF_1121/a/138:140,
1/a/170:172		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_6SPF_1131/a/141:147,
1/a/162:169		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_6SPF_1141/a/197:201,
1/a/206:208		No text annotation
homologous
IL_5J7L_013
IL_66997.2
IL_6SPF_1151/a/236:241,
1/a/271:278		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_6SPF_1751/a/243:246,
1/a/268:269		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_6SPF_1171/a/286:287,
1/a/298:302		C-loop
homologous
IL_6CZR_125
NA
IL_6SPF_1181/a/361:363,
1/a/386:387		Single bulged U
geometric
IL_5J7L_017
IL_89505.4
IL_6SPF_1191/a/365:371,
1/a/380:384		No text annotation
IL_6SPF_1201/a/440:447,
1/a/474:482		No text annotation
IL_6SPF_1761/a/449:451,
1/a/471:472		Single stack bend
geometric
IL_8CRE_012
IL_90729.1
IL_6SPF_1221/a/451:452,
1/a/469:471		Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_6SPF_1231/a/498:507,
1/a/533:535		No text annotation
IL_6SPF_1241/a/507:508,
1/a/531:533		Single stack bend
geometric
IL_4V9F_005
IL_90729.1
IL_6SPF_1251/a/509:515,
1/a/522:530		Kink-turn related
geometric
IL_4V88_415
NA
IL_6SPF_1261/a/563:569,
1/a/874:875		No text annotation
homologous
IL_5J7L_026
IL_38186.6
IL_6SPF_1671/a/574:578,
1/a/751:755		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_6SPF_1281/a/587:590,
1/a/638:640		Major groove platform with extra pair
geometric
IL_5TBW_091
NA
IL_6SPF_1291/a/591:593,
1/a/633:637		8-nt loop receptor
geometric
IL_6CK5_002
IL_36516.3
IL_6SPF_1301/a/599:606,
1/a/622:627		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_6SPF_1311/a/648:649,
1/a/745:748		Major groove platform; stack outside cWW
homologous
IL_5J7L_031
IL_50694.7
IL_6SPF_1321/a/652:653,
1/a/740:742		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_6SPF_1691/a/652:664,
1/a/730:742		No text annotation
IL_6SPF_1331/a/655:662,
1/a/732:738		No text annotation
IL_6SPF_1341/a/667:674,
1/a/704:711		No text annotation
IL_6SPF_1771/a/768:773,
1/a/797:799		No text annotation
IL_6SPF_1361/a/773:777,
1/a/793:797		tSH-tHW-tHS
homologous
IL_5J7L_037
IL_17136.7
IL_6SPF_1371/a/881:888,
1/a/899:904		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_6SPF_1381/a/916:917,
1/a/1387:1389		Single bulged A
homologous
IL_5J7L_039
IL_31462.7
IL_6SPF_1391/a/919:921,
1/a/1384:1385		Single bulged G
homologous
IL_4LFB_036
IL_00225.14
IL_6SPF_1401/a/925:929,
1/a/1374:1380		No text annotation
IL_6SPF_1411/a/997:1022,
1/a/1027:1031		No text annotation
IL_6SPF_1421/a/1044:1045,
1/a/1200:1202		Single stack bend
geometric
IL_7RQB_058
NA
IL_6SPF_1431/a/1231:1236,
1/a/1290:1331		No text annotation
IL_6SPF_1441/a/1393:1395,
1/a/1495:1498		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_6SPF_1451/a/1395:1398,
1/a/1491:1495		No text annotation
homologous
IL_5J7L_059
IL_65718.4
IL_6SPF_1701/a/1399:1401,
1/a/1488:1490		Isolated non-canonical cWW pair
homologous
IL_4LFB_069
IL_87907.2
IL_6SPF_1471/a/1401:1403,
1/a/1485:1488		Isolated non-canonical cWW pair
geometric
IL_5J7L_009
IL_57744.1
IL_6SPF_1481/a/1406:1408,
1/a/1480:1482		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_6SPF_1491/a/1410:1413,
1/a/1475:1478		Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_6SPF_1501/a/1424:1429,
1/a/1460:1464		Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_6SPF_1511/a/1434:1436,
1/a/1454:1455		Major groove platform
geometric
IL_4WF9_026
IL_48076.6
IL_6SPF_1521/a/1439:1442,
1/a/1449:1451		No text annotation
homologous
IL_5J7L_065
IL_31531.3

Problematic loops

#loop idProblemSequence
IL_6SPF_003No text annotation
IL_6SPF_029No text annotation
IL_6SPF_154No text annotation
IL_6SPF_156No text annotation
IL_6SPF_160No text annotation
IL_6SPF_161No text annotation
IL_6SPF_097No text annotation
IL_6SPF_101No text annotation
IL_6SPF_165No text annotation
IL_6SPF_109No text annotation
IL_6SPF_111Isolated non-canonical cWW pair
IL_6SPF_116No text annotation
IL_6SPF_166Isolated non-canonical cWW pair
IL_6SPF_121No text annotation
IL_6SPF_127tSH-tHW-tHS-cWW
IL_6SPF_168No text annotation
IL_6SPF_135No text annotation
IL_6SPF_146Other IL

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6SPF_0011/A/30:31,
1/A/465:472,
1/A/500:501		No text annotation
homologous
J3_7RQB_001
NA
J3_6SPF_0171/A/30:31,
1/A/465:475,
1/A/487:501		No text annotation
homologous
J3_9DFE_002
J3_92134.2
J3_6SPF_0181/A/32:35,
1/A/436:452,
1/A/459:464		No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_6SPF_0021/A/56:57,
1/A/70:76,
1/A/110:114		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_6SPF_0191/A/291:295,
1/A/310:319,
1/A/331:335		No text annotation
homologous
J3_4WF9_015
J3_46299.2
J3_6SPF_0201/A/591:594,
1/A/614:618,
1/A/625:646		No text annotation
J3_6SPF_0031/A/673:679,
1/A/763:765,
1/A/781:784		No text annotation
homologous
J3_7RQB_004
NA
J3_6SPF_0041/A/688:690,
1/A/722:726,
1/A/750:753		No text annotation
homologous
J3_7RQB_005
NA
J3_6SPF_0051/A/1285:1290,
1/A/1615:1617,
1/A/1629:1632		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_6SPF_0061/A/1293:1296,
1/A/1595:1601,
1/A/1610:1612		No text annotation
homologous
J3_5J7L_042
J3_19545.2
J3_6SPF_0211/A/1331:1337,
1/A/1368:1372,
1/A/1389:1390		No text annotation
homologous
J3_7A0S_018
J3_31965.2
J3_6SPF_0221/A/1411:1416,
1/A/1554:1555,
1/A/1558:1564		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_6SPF_0071/A/2078:2080,
1/A/2183:2187,
1/A/2210:2215		Kink-turn 3-way junction
homologous
J3_5J7L_044
J3_89368.5
J3_6SPF_0231/A/2269:2271,
1/A/2371:2382,
1/A/2408:2414		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_6SPF_0241/A/2282:2284,
1/A/2308:2310,
1/A/2319:2324		No text annotation
homologous
J3_5J7L_045
J3_61124.2
J3_6SPF_0091/A/2504:2507,
1/A/2532:2534,
1/A/2548:2554		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_6SPF_0101/A/2799:2802,
1/A/2818:2823,
1/A/2869:2875		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_6SPF_0111/B/10:16,
1/B/68:70,
1/B/106:110		No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_6SPF_0251/B/10:16,
1/B/68:79,
1/B/97:110		No text annotation
J3_6SPF_0121/a/46:47,
1/a/355:361,
1/a/387:389		No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_6SPF_0261/a/46:52,
1/a/353:361,
1/a/387:389		No text annotation
homologous
J3_5J7L_050
J3_46317.4
J3_6SPF_0131/a/580:582,
1/a/645:648,
1/a/748:749		No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_6SPF_0271/a/580:582,
1/a/645:649,
1/a/745:749		No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_6SPF_0281/a/666:667,
1/a/711:719,
1/a/726:728		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_6SPF_0301/a/820:823,
1/a/851:855,
1/a/862:868		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_6SPF_0311/a/1067:1068,
1/a/1077:1080,
1/a/1093:1096		No text annotation
homologous
J3_4LFB_017
J3_79369.1
J4_6SPF_0011/A/268:274,
1/A/354:366,
1/A/390:398,
1/A/411:415		No text annotation
J4_6SPF_0021/A/291:295,
1/A/310:313,
1/A/317:319,
1/A/331:335		No text annotation
homologous
J4_7A0S_002
J4_71729.5
J4_6SPF_0031/A/1257:1263,
1/A/1281:1282,
1/A/1635:1638,
1/A/1996:1997		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_6SPF_0041/A/1297:1301,
1/A/1325:1330,
1/A/1391:1392,
1/A/1587:1594		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_6SPF_0051/A/1300:1301,
1/A/1325:1330,
1/A/1391:1392,
1/A/1587:1593		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_6SPF_0141/A/1427:1434,
1/A/1451:1454,
1/A/1512:1513,
1/A/1536:1541		No text annotation
J4_6SPF_0071/A/1759:1763,
1/A/1775:1779,
1/A/1814:1817,
1/A/1962:1966		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_6SPF_0081/A/1820:1822,
1/A/1892:1893,
1/A/1911:1920,
1/A/1954:1959		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_6SPF_0151/A/2272:2277,
1/A/2329:2340,
1/A/2351:2359,
1/A/2368:2370		No text annotation
J4_6SPF_0101/A/2630:2633,
1/A/2661:2663,
1/A/2718:2722,
1/A/2756:2758		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J4_6SPF_0111/a/109:116,
1/a/233:234,
1/a/280:283,
1/a/305:306		No text annotation
homologous
J4_6CZR_027
NA
J4_6SPF_0121/a/137:138,
1/a/172:179,
1/a/186:192,
1/a/213:214		No text annotation
J4_6SPF_0161/a/569:571,
1/a/758:765,
1/a/802:815,
1/a/873:874		No text annotation
J5_6SPF_0011/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:150,
1/A/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_6SPF_0021/A/522:524,
1/A/550:554,
1/A/567:569,
1/A/1248:1249,
1/A/2004:2005		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_6SPF_0031/A/574:579,
1/A/658:661,
1/A/799:802,
1/A/1182:1183,
1/A/1237:1243		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_6SPF_0041/A/1664:1672,
1/A/1696:1697,
1/A/1738:1739,
1/A/1743:1751,
1/A/1975:1977		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_6SPF_0051/A/2044:2051,
1/A/2433:2440,
1/A/2487:2493,
1/A/2570:2575,
1/A/2593:2598		No text annotation
J5_6SPF_0061/A/2061:2064,
1/A/2230:2233,
1/A/2245:2246,
1/A/2268:2269,
1/A/2414:2422		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J5_6SPF_0091/a/36:40,
1/a/396:400,
1/a/430:436,
1/a/486:494,
1/a/539:542		No text annotation
J5_6SPF_0081/a/58:61,
1/a/100:107,
1/a/308:310,
1/a/331:333,
1/a/344:348		No text annotation
homologous
J5_5J7L_003
J5_59910.6
J6_6SPF_0011/A/45:46,
1/A/179:183,
1/A/214:224,
1/A/231:235,
1/A/262:266,
1/A/417:424		No text annotation
J6_6SPF_0021/A/2061:2064,
1/A/2230:2233,
1/A/2245:2246,
1/A/2268:2271,
1/A/2371:2382,
1/A/2408:2422		No text annotation
J7_6SPF_0011/A/8:15,
1/A/516:522,
1/A/2005:2010,
1/A/2027:2030,
1/A/2612:2617,
1/A/2775:2776,
1/A/2881:2882		No text annotation
J7_6SPF_0021/A/807:812,
1/A/825:828,
1/A/930:936,
1/A/961:966,
1/A/977:983,
1/A/1152:1157,
1/A/1170:1177		No text annotation

Problematic loops

#loop idProblemSequence
J3_6SPF_008No text annotation
J3_6SPF_014No text annotation
J3_6SPF_029No text annotation
J3_6SPF_015No text annotation
J3_6SPF_016No text annotation
J4_6SPF_006No text annotation
J4_6SPF_009No text annotation
J4_6SPF_013No text annotation
J5_6SPF_007No text annotation

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