HL_6SPF_025

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGGGUCAUCCCGACUUAC

Length

18 nucleotides

Bulged bases

6SPF|1|A|A|881

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|A|G|869
6SPF|1|A|G|870
6SPF|1|A|G|871
6SPF|1|A|G|872
6SPF|1|A|U|873
6SPF|1|A|C|874
6SPF|1|A|A|875
6SPF|1|A|U|876
6SPF|1|A|C|877
6SPF|1|A|C|878
6SPF|1|A|C|879
6SPF|1|A|G|880
6SPF|1|A|A|881
6SPF|1|A|C|882
6SPF|1|A|U|883
6SPF|1|A|U|884
6SPF|1|A|A|885
6SPF|1|A|C|886

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain m

30S ribosomal protein S13

Chain s

30S ribosomal protein S19