HL_6SPF_028
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GCUUAGACAGCUAGGAGGUUGGCUUAGAAGCAGCCACCCUUUAAAGAAAGCGUAAUAGCUCACUAGUCGAGU
- Length
- 72 nucleotides
- Bulged bases
- 6SPF|1|A|A|1036, 6SPF|1|A|U|1043, 6SPF|1|A|A|1044, 6SPF|1|A|G|1046, 6SPF|1|A|U|1051, 6SPF|1|A|G|1052, 6SPF|1|A|G|1053, 6SPF|1|A|C|1054, 6SPF|1|A|U|1055, 6SPF|1|A|U|1056, 6SPF|1|A|A|1059, 6SPF|1|A|A|1063, 6SPF|1|A|G|1064, 6SPF|1|A|C|1065, 6SPF|1|A|C|1070, 6SPF|1|A|U|1072, 6SPF|1|A|U|1073, 6SPF|1|A|A|1078, 6SPF|1|A|A|1085, 6SPF|1|A|C|1092, 6SPF|1|A|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPF|1|A|G|1032
6SPF|1|A|C|1033
6SPF|1|A|U|1034
6SPF|1|A|U|1035
6SPF|1|A|A|1036
6SPF|1|A|G|1037
6SPF|1|A|A|1038
6SPF|1|A|C|1039
6SPF|1|A|A|1040
6SPF|1|A|G|1041
6SPF|1|A|C|1042
6SPF|1|A|U|1043
6SPF|1|A|A|1044
6SPF|1|A|G|1045
6SPF|1|A|G|1046
6SPF|1|A|A|1047
6SPF|1|A|G|1048
6SPF|1|A|G|1049
6SPF|1|A|U|1050
6SPF|1|A|U|1051
6SPF|1|A|G|1052
6SPF|1|A|G|1053
6SPF|1|A|C|1054
6SPF|1|A|U|1055
6SPF|1|A|U|1056
6SPF|1|A|A|1057
6SPF|1|A|G|1058
6SPF|1|A|A|1059
6SPF|1|A|A|1060
6SPF|1|A|G|1061
6SPF|1|A|C|1062
6SPF|1|A|A|1063
6SPF|1|A|G|1064
6SPF|1|A|C|1065
6SPF|1|A|C|1066
6SPF|1|A|A|1067
6SPF|1|A|C|1068
6SPF|1|A|C|1069
6SPF|1|A|C|1070
6SPF|1|A|U|1071
6SPF|1|A|U|1072
6SPF|1|A|U|1073
6SPF|1|A|A|1074
6SPF|1|A|A|1075
6SPF|1|A|A|1076
6SPF|1|A|G|1077
6SPF|1|A|A|1078
6SPF|1|A|A|1079
6SPF|1|A|A|1080
6SPF|1|A|G|1081
6SPF|1|A|C|1082
6SPF|1|A|G|1083
6SPF|1|A|U|1084
6SPF|1|A|A|1085
6SPF|1|A|A|1086
6SPF|1|A|U|1087
6SPF|1|A|A|1088
6SPF|1|A|G|1089
6SPF|1|A|C|1090
6SPF|1|A|U|1091
6SPF|1|A|C|1092
6SPF|1|A|A|1093
6SPF|1|A|C|1094
6SPF|1|A|U|1095
6SPF|1|A|A|1096
6SPF|1|A|G|1097
6SPF|1|A|U|1098
6SPF|1|A|C|1099
6SPF|1|A|G|1100
6SPF|1|A|A|1101
6SPF|1|A|G|1102
6SPF|1|A|U|1103
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain I
- 50S ribosomal protein L11
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
Coloring options: