HL_6SPF_034

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6SPF|1|A|U|1383, 6SPF|1|A|U|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1473

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6SPF|1|A|G|1376
6SPF|1|A|U|1377
6SPF|1|A|U|1378
6SPF|1|A|A|1379
6SPF|1|A|A|1380
6SPF|1|A|U|1381
6SPF|1|A|A|1382
6SPF|1|A|U|1383
6SPF|1|A|U|1384
6SPF|1|A|C|1385

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23