HL_6SPF_039

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6SPF|1|A|A|1604, 6SPF|1|A|A|1606, 6SPF|1|A|A|1608

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_039 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0834

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6SPF|1|A|C|1602
6SPF|1|A|G|1603
6SPF|1|A|A|1604
6SPF|1|A|C|1605
6SPF|1|A|A|1606
6SPF|1|A|C|1607
6SPF|1|A|A|1608
6SPF|1|A|G|1609

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain S

50S ribosomal protein L22