HL_6SPF_047

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGUAACUAUAACGG

Length

14 nucleotides

Bulged bases

6SPF|1|A|U|1902, 6SPF|1|A|A|1903

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|A|C|1896
6SPF|1|A|G|1897
6SPF|1|A|U|1898
6SPF|1|A|A|1899
6SPF|1|A|A|1900
6SPF|1|A|C|1901
6SPF|1|A|U|1902
6SPF|1|A|A|1903
6SPF|1|A|U|1904
6SPF|1|A|A|1905
6SPF|1|A|A|1906
6SPF|1|A|C|1907
6SPF|1|A|G|1908
6SPF|1|A|G|1909

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA