HL_6SPF_067

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGCUGGGUGUGUAAGCGUUGUGAGGCGUUGAGCUAACCAGUAC

Length

43 nucleotides

Bulged bases

6SPF|1|A|A|2866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|A|G|2825
6SPF|1|A|G|2826
6SPF|1|A|C|2827
6SPF|1|A|U|2828
6SPF|1|A|G|2829
6SPF|1|A|G|2830
6SPF|1|A|G|2831
6SPF|1|A|U|2832
6SPF|1|A|G|2833
6SPF|1|A|U|2834
6SPF|1|A|G|2835
6SPF|1|A|U|2836
6SPF|1|A|A|2837
6SPF|1|A|A|2838
6SPF|1|A|G|2839
6SPF|1|A|C|2840
6SPF|1|A|G|2841
6SPF|1|A|U|2842
6SPF|1|A|U|2843
6SPF|1|A|G|2844
6SPF|1|A|U|2845
6SPF|1|A|G|2846
6SPF|1|A|A|2847
6SPF|1|A|G|2848
6SPF|1|A|G|2849
6SPF|1|A|C|2850
6SPF|1|A|G|2851
6SPF|1|A|U|2852
6SPF|1|A|U|2853
6SPF|1|A|G|2854
6SPF|1|A|A|2855
6SPF|1|A|G|2856
6SPF|1|A|C|2857
6SPF|1|A|U|2858
6SPF|1|A|A|2859
6SPF|1|A|A|2860
6SPF|1|A|C|2861
6SPF|1|A|C|2862
6SPF|1|A|A|2863
6SPF|1|A|G|2864
6SPF|1|A|U|2865
6SPF|1|A|A|2866
6SPF|1|A|C|2867

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19