HL_6SPF_077
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SPF_077 not in the Motif Atlas
- Homologous match to HL_4LFB_008
- Geometric discrepancy: 0.1471
- The information below is about HL_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39665.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6SPF|1|a|A|314
6SPF|1|a|A|315
6SPF|1|a|C|316
6SPF|1|a|U|317
6SPF|1|a|G|318
6SPF|1|a|A|319
6SPF|1|a|G|320
6SPF|1|a|A|321
6SPF|1|a|C|322
6SPF|1|a|A|323
6SPF|1|a|C|324
6SPF|1|a|G|325
6SPF|1|a|G|326
6SPF|1|a|U|327
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
Coloring options: