HL_6SPF_082

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_082 not in the Motif Atlas

Geometric match to HL_1JID_001

Geometric discrepancy: 0.2771

The information below is about HL_1JID_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6SPF|1|a|C|516
6SPF|1|a|A|517
6SPF|1|a|G|518
6SPF|1|a|C|519
6SPF|1|a|C|520
6SPF|1|a|G|521

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12