HL_6SPF_085

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_085 not in the Motif Atlas

Geometric match to HL_4Y1M_002

Geometric discrepancy: 0.1576

The information below is about HL_4Y1M_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6SPF|1|a|C|720
6SPF|1|a|G|721
6SPF|1|a|A|722
6SPF|1|a|A|723
6SPF|1|a|G|724
6SPF|1|a|G|725

Current chains

Chain a

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S15