HL_6SPF_086
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GGAUUAGAUACCC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SPF_086 not in the Motif Atlas
- Geometric match to HL_4V9F_003
- Geometric discrepancy: 0.2451
- The information below is about HL_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 21
Unit IDs
6SPF|1|a|G|779
6SPF|1|a|G|780
6SPF|1|a|A|781
6SPF|1|a|U|782
6SPF|1|a|U|783
6SPF|1|a|A|784
6SPF|1|a|G|785
6SPF|1|a|A|786
6SPF|1|a|U|787
6SPF|1|a|A|788
6SPF|1|a|C|789
6SPF|1|a|C|790
6SPF|1|a|C|791
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- 30S ribosomal protein S11
- Chain u
- 30S ribosomal protein S21
Coloring options: