HL_6SPF_095

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPF_095 not in the Motif Atlas

Geometric match to HL_4ZT0_006

Geometric discrepancy: 0.2863

The information below is about HL_4ZT0_006

Detailed Annotation

GNRA with GA tSW pair

Broad Annotation

GNRA with GA tSW pair

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SPF|1|a|C|1443
6SPF|1|a|G|1444
6SPF|1|a|C|1445
6SPF|1|a|A|1446
6SPF|1|a|A|1447
6SPF|1|a|G|1448

Current chains

Chain a

16S rRNA

Nearby chains