HL_6SPF_106

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAUCCUUGAGAUC

Length

13 nucleotides

Bulged bases

6SPF|1|a|U|837, 6SPF|1|a|A|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|a|G|831
6SPF|1|a|A|832
6SPF|1|a|U|833
6SPF|1|a|C|834
6SPF|1|a|C|835
6SPF|1|a|U|836
6SPF|1|a|U|837
6SPF|1|a|G|838
6SPF|1|a|A|839
6SPF|1|a|G|840
6SPF|1|a|A|841
6SPF|1|a|U|842
6SPF|1|a|C|843

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain r

30S ribosomal protein S18