HL_6SPG_004

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GAUAAC

Length

6 nucleotides

Bulged bases

6SPG|1|A|U|139, 6SPG|1|A|A|140, 6SPG|1|A|A|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_004 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1645

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6SPG|1|A|G|137
6SPG|1|A|A|138
6SPG|1|A|U|139
6SPG|1|A|A|140
6SPG|1|A|A|141
6SPG|1|A|C|142

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23