Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6SPG_0011/A/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_6SPG_0021/A/87:96No text annotation
homologous
HL_5J7L_135
NA
HL_6SPG_0031/A/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.7
HL_6SPG_0041/A/137:142No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_6SPG_0051/A/158:168No text annotation
homologous
HL_5J7L_138
NA
HL_6SPG_0061/A/194:201No text annotation
geometric
HL_5J7L_139
NA
HL_6SPG_0071/A/225:230No text annotation
homologous
HL_5J7L_140
NA
HL_6SPG_0081/A/246:252No text annotation
homologous
HL_4WF9_008
HL_76371.2
HL_6SPG_0091/A/299:306T-loop with 1 bulged base
geometric
HL_7A0S_010
HL_13999.3
HL_6SPG_0101/A/313:317No text annotation
homologous
HL_7RQB_011
NA
HL_6SPG_0111/A/321:329T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_6SPG_0121/A/373:383No text annotation
homologous
HL_7RQB_013
NA
HL_6SPG_0131/A/401:408Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_6SPG_0141/A/453:458GNRA
homologous
HL_7A0S_015
HL_34789.4
HL_6SPG_0151/A/478:484GNRA
homologous
HL_5J7L_148
NA
HL_6SPG_0161/A/533:541No text annotation
HL_6SPG_0171/A/556:565T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_6SPG_0181/A/601:607No text annotation
homologous
HL_5J7L_151
NA
HL_6SPG_0191/A/619:624GNRA
homologous
HL_5J7L_152
NA
HL_6SPG_0201/A/631:637No text annotation
homologous
HL_7RQB_021
NA
HL_6SPG_0211/A/702:709GNRA wlth tandem sheared
homologous
HL_5J7L_154
NA
HL_6SPG_0221/A/734:743No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_6SPG_0231/A/769:775UNCG
geometric
HL_6JQ6_004
HL_61337.3
HL_6SPG_0241/A/816:821No text annotation
homologous
HL_7RQB_025
NA
HL_6SPG_0261/A/945:952GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_6SPG_0271/A/968:975No text annotation
homologous
HL_5J7L_160
NA
HL_6SPG_0301/A/1159:1168No text annotation
HL_6SPG_0311/A/1209:1214GNRA
homologous
HL_5J7L_164
NA
HL_6SPG_0321/A/1268:1276T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_6SPG_0331/A/1311:1317Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_6SPG_0341/A/1350:1355GNRA
homologous
HL_5J7L_167
NA
HL_6SPG_0351/A/1376:1385No text annotation
homologous
HL_5J7L_168
NA
HL_6SPG_0361/A/1437:1448UNCG variation
geometric
HL_6VMY_004
HL_51020.2
HL_6SPG_0371/A/1479:1485No text annotation
homologous
HL_7RQB_038
NA
HL_6SPG_0381/A/1555:1558Mini UNCG
homologous
HL_7A0S_039
HL_90436.3
HL_6SPG_0391/A/1602:1609No text annotation
homologous
HL_7RQB_040
NA
HL_6SPG_0401/A/1620:1626GNRA
homologous
HL_5J7L_174
NA
HL_6SPG_0411/A/1681:1686UNCG
geometric
HL_4PMI_004
HL_61337.3
HL_6SPG_0421/A/1714:1720No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_6SPG_0431/A/1739:1743No text annotation
homologous
HL_7RQB_044
NA
HL_6SPG_0441/A/1764:1774No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6SPG_0451/A/1793:1798GNRA related
homologous
HL_5J7L_179
NA
HL_6SPG_0461/A/1855:1860GNRA
geometric
HL_5TBW_017
NA
HL_6SPG_0471/A/1896:1908No text annotation
geometric
HL_6M0X_002
HL_32346.6
HL_6SPG_0481/A/1936:1944No text annotation
homologous
HL_5J7L_182
NA
HL_6SPG_0491/A/2014:2023No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6SPG_0511/A/2196:2202No text annotation
HL_6SPG_0521/A/2235:2243No text annotation
homologous
HL_7A0S_052
HL_11974.2
HL_6SPG_0531/A/2251:2263No text annotation
homologous
HL_5J7L_187
NA
HL_6SPG_1091/A/2291:2299No text annotation
homologous
HL_7A0S_076
HL_02452.1
HL_6SPG_0551/A/2311:2318Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_6SPG_0561/A/2342:2349GNRA with extra cWW
homologous
HL_4WF9_053
HL_87268.2
HL_6SPG_0571/A/2361:2366GNRA
homologous
HL_4WF9_054
HL_34789.4
HL_6SPG_0581/A/2391:2400No text annotation
homologous
HL_5J7L_192
NA
HL_6SPG_0591/A/2458:2466No text annotation
homologous
HL_7A0S_059
HL_52011.1
HL_6SPG_0601/A/2515:2522GNRA variation
homologous
HL_4WF9_057
HL_46665.2
HL_6SPG_0611/A/2538:2544No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_6SPG_0621/A/2581:2586GNRA
homologous
HL_7A0S_062
HL_34789.4
HL_6SPG_0631/A/2645:2650GNRA
homologous
HL_7A0S_063
HL_34789.4
HL_6SPG_0641/A/2688:2693Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_6SPG_0651/A/2732:2746No text annotation
homologous
HL_5J7L_199
NA
HL_6SPG_0671/A/2806:2814No text annotation
homologous
HL_7RQB_068
NA
HL_6SPG_0681/A/2843:2848GNRA
homologous
HL_7A0S_068
HL_34789.4
HL_6SPG_1041/B/34:48No text annotation
homologous
HL_5J7L_215
NA
HL_6SPG_0691/B/38:44No text annotation
homologous
HL_4V9F_071
HL_59381.2
HL_6SPG_0701/B/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_6SPG_0711/a/12:22No text annotation
homologous
HL_4LFB_001
HL_73535.1
HL_6SPG_0731/a/152:157GNRA
homologous
HL_4LFB_003
HL_34789.4
HL_6SPG_0741/a/180:185No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_6SPG_0761/a/253:261GNRA related
homologous
HL_4LFB_006
HL_87268.2
HL_6SPG_0771/a/290:295GNRA
homologous
HL_5J7L_007
NA
HL_6SPG_0781/a/314:327No text annotation
homologous
HL_6CZR_079
NA
HL_6SPG_0791/a/336:341UNCG
homologous
HL_6CZR_080
NA
HL_6SPG_0801/a/373:378No text annotation
geometric
HL_5U3G_001
HL_75660.7
HL_6SPG_0811/a/413:418UNCG
homologous
HL_4LFB_011
HL_61337.3
HL_6SPG_0831/a/516:521No text annotation
geometric
HL_5J7L_143
NA
HL_6SPG_0841/a/611:617GNRA-like with tWH
homologous
HL_5J7L_014
NA
HL_6SPG_0851/a/683:692No text annotation
homologous
HL_4LFB_015
HL_38491.2
HL_6SPG_0861/a/720:725GNRA
homologous
HL_5J7L_016
NA
HL_6SPG_0871/a/780:790No text annotation
homologous
HL_4LFB_017
HL_38491.2
HL_6SPG_0891/a/856:861GNRA
homologous
HL_5J7L_019
NA
HL_6SPG_0901/a/891:896GNRA
homologous
HL_4LFB_020
HL_34789.4
HL_6SPG_0911/a/957:966No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6SPG_0921/a/1006:1011GNRA
homologous
HL_4LFB_022
HL_34789.4
HL_6SPG_0941/a/1069:1076GNRA with extra cWW
geometric
HL_7A0S_056
HL_87268.2
HL_6SPG_0951/a/1083:1090T-loop related
homologous
HL_4LFB_025
HL_63894.2
HL_6SPG_0971/a/1159:1165GNRA
homologous
HL_4LFB_027
HL_34789.4
HL_6SPG_0991/a/1308:1317T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_6SPG_1001/a/1350:1360No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_6SPG_1011/a/1443:1448UNCG
homologous
HL_5J7L_030
NA
HL_6SPG_1021/a/1509:1514GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_6SPG_025No text annotation
HL_6SPG_028No text annotation
HL_6SPG_103No text annotation
HL_6SPG_108No text annotation
HL_6SPG_029No text annotation
HL_6SPG_050No text annotation
HL_6SPG_054No text annotation
HL_6SPG_066UNCG variation
HL_6SPG_072No text annotation
HL_6SPG_105No text annotation
HL_6SPG_075Mini UNCG
HL_6SPG_082GNRA wlth extra near cWW
HL_6SPG_088No text annotation
HL_6SPG_093UNCG
HL_6SPG_096No text annotation
HL_6SPG_106No text annotation
HL_6SPG_098GNRA
HL_6SPG_107No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6SPG_0011/A/24:30,
1/A/501:507
Triple sheared with non-canonical cWW
homologous
IL_5J7L_245
NA
IL_6SPG_0021/A/36:37,
1/A/433:435
Single bulged A
homologous
IL_7RQB_002
NA
IL_6SPG_0031/A/43:44,
1/A/425:427
Minor groove platform
homologous
IL_7RQB_003
NA
IL_6SPG_0041/A/81:85,
1/A/98:105
Kink-turn
homologous
IL_7RQB_004
NA
IL_6SPG_0051/A/183:184,
1/A/212:214
Single stack bend
homologous
IL_7A0S_005
IL_15011.2
IL_6SPG_0061/A/188:194,
1/A/201:208
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_6SPG_0071/A/239:245,
1/A/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_6SPG_0081/A/279:282,
1/A/346:349
No text annotation
IL_6SPG_0091/A/287:289,
1/A/337:341
No text annotation
homologous
IL_4WF9_014
IL_76658.1
IL_6SPG_0101/A/297:299,
1/A/306:308
Isolated non-canonical cWW pair
geometric
IL_4KZD_003
IL_68118.3
IL_6SPG_0111/A/472:475,
1/A/487:500
No text annotation
homologous
IL_5J7L_255
NA
IL_6SPG_0121/A/527:530,
1/A/544:547
Double sheared
homologous
IL_5J7L_256
NA
IL_6SPG_0131/A/554:556,
1/A/565:567
Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_6SPG_0141/A/596:600,
1/A/608:612
AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_6SPG_0151/A/662:664,
1/A/796:798
No text annotation
geometric
IL_7RQB_017
NA
IL_6SPG_0161/A/664:668,
1/A/789:796
tHW-tHW cross-strand stack
homologous
IL_5J7L_260
NA
IL_6SPG_0171/A/687:688,
1/A/753:755
Single bulged A
geometric
IL_4V9F_025
IL_14190.2
IL_6SPG_0181/A/692:693,
1/A/718:720
Single bulged G
homologous
IL_5J7L_262
NA
IL_6SPG_0191/A/693:697,
1/A/714:718
Triple sheared
geometric
IL_7RQB_021
NA
IL_6SPG_0201/A/728:730,
1/A/747:748
Major groove platform
homologous
IL_5J7L_264
NA
IL_6SPG_0211/A/731:733,
1/A/744:746
Isolated non-canonical cWW pair
homologous
IL_7A0S_020
IL_01003.3
IL_6SPG_0221/A/765:767,
1/A/777:781
Multiple bulged bases
homologous
IL_5J7L_265
NA
IL_6SPG_0231/A/827:828,
1/A/930:932
Single stack bend
homologous
IL_5J7L_266
NA
IL_6SPG_0241/A/834:837,
1/A/919:924
No text annotation
IL_6SPG_1741/A/839:840,
1/A/915:917
Single stack bend
homologous
IL_5J7L_269
NA
IL_6SPG_0261/A/845:851,
1/A/904:910
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA
IL_6SPG_0271/A/851:852,
1/A/902:904
Minor groove platform
homologous
IL_7RQB_028
NA
IL_6SPG_0281/A/853:858,
1/A/897:901
No text annotation
geometric
IL_4V9F_035
IL_38603.1
IL_6SPG_0291/A/859:861,
1/A/894:896
Isolated non-canonical cWW pair
homologous
IL_5J7L_273
NA
IL_6SPG_0301/A/864:868,
1/A/887:891
Double sheared with non-canonical cWW
homologous
IL_5J7L_274
NA
IL_6SPG_0331/A/984:986,
1/A/1150:1151
Single bulged C
homologous
IL_7RQB_035
NA
IL_6SPG_0341/A/988:992,
1/A/1144:1148
UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_6SPG_0351/A/994:1001,
1/A/1141:1142
SSU/LSU pseudoknot
homologous
IL_4WF9_037
IL_11411.1
IL_6SPG_0361/A/1001:1003,
1/A/1140:1141
Single bulged U
geometric
IL_5J7L_279
NA
IL_6SPG_1761/A/1008:1014,
1/A/1130:1135
No text annotation
homologous
IL_9DFE_038
IL_57188.6
IL_6SPG_0381/A/1014:1020,
1/A/1114:1130
No text annotation
geometric
IL_4WF9_040
IL_50715.4
IL_6SPG_0391/A/1021:1024,
1/A/1111:1113
Isolated non-canonical cWW pair
homologous
IL_4WF9_041
IL_76400.1
IL_6SPG_0401/A/1028:1031,
1/A/1104:1107
Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
NA
IL_6SPG_0411/A/1033:1041,
1/A/1098:1102
Kink-turn
homologous
IL_5J7L_284
NA
IL_6SPG_1931/A/1183:1185,
1/A/1234:1237
Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_6SPG_0451/A/1189:1193,
1/A/1227:1230
No text annotation
homologous
IL_5J7L_287
NA
IL_6SPG_0461/A/1195:1202,
1/A/1221:1225
Kink-turn
homologous
IL_5J7L_288
NA
IL_6SPG_0471/A/1249:1256,
1/A/1998:2004
8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_6SPG_0481/A/1297:1300,
1/A/1593:1594
Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_74641.2
IL_6SPG_0491/A/1306:1310,
1/A/1318:1320
C-loop
homologous
IL_5J7L_291
NA
IL_6SPG_0501/A/1338:1342,
1/A/1363:1367
UAA/GAN
homologous
IL_5J7L_292
NA
IL_6SPG_0511/A/1344:1348,
1/A/1357:1361
tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_6SPG_0521/A/1402:1404,
1/A/1571:1577
No text annotation
IL_6SPG_0531/A/1404:1408,
1/A/1567:1571
UAA/GAN
geometric
IL_5J7L_295
NA
IL_6SPG_0541/A/1419:1422,
1/A/1547:1551
Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_6SPG_0551/A/1424:1427,
1/A/1541:1545
tSH-tHW
homologous
IL_5J7L_297
NA
IL_6SPG_1781/A/1455:1458,
1/A/1507:1511
No text annotation
homologous
IL_5J7L_299
NA
IL_6SPG_0571/A/1460:1465,
1/A/1500:1505
No text annotation
IL_6SPG_0581/A/1467:1469,
1/A/1494:1498
No text annotation
IL_6SPG_0591/A/1476:1478,
1/A/1486:1487
Single bulged A
homologous
IL_5J7L_302
NA
IL_6SPG_0601/A/1513:1516,
1/A/1532:1536
UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_6SPG_0611/A/1641:1646,
1/A/1991:1993
No text annotation
homologous
IL_4WF9_062
IL_12566.5
IL_6SPG_0621/A/1653:1655,
1/A/1982:1984
Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_6SPG_0631/A/1656:1659,
1/A/1980:1981
Major groove platform; stack outside cWW
homologous
IL_5J7L_306
NA
IL_6SPG_1791/A/1656:1664,
1/A/1977:1981
No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6SPG_0641/A/1659:1664,
1/A/1977:1980
Intercalated tWH
geometric
IL_4WF9_065
IL_28217.1
IL_6SPG_0651/A/1676:1681,
1/A/1686:1692
tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
NA
IL_6SPG_0661/A/1708:1712,
1/A/1722:1727
No text annotation
IL_6SPG_0671/A/1757:1758,
1/A/1967:1969
Single bulged A
homologous
IL_7A0S_064
IL_14190.2
IL_6SPG_0681/A/1785:1791,
1/A/1800:1808
Kink-turn related
homologous
IL_5J7L_313
NA
IL_6SPG_0691/A/1824:1827,
1/A/1889:1890
Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_6SPG_0701/A/1828:1829,
1/A/1885:1888
Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6SPG_0711/A/1833:1836,
1/A/1880:1881
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_6SPG_1801/A/1838:1847,
1/A/1869:1878
No text annotation
homologous
IL_5J7L_387
NA
IL_6SPG_0721/A/1851:1854,
1/A/1861:1865
UAA/GAN related
homologous
IL_5J7L_317
NA
IL_6SPG_0731/A/1920:1921,
1/A/1951:1954
Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_6SPG_0741/A/1921:1932,
1/A/1948:1951
No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_6SPG_0751/A/2037:2039,
1/A/2604:2605
Major groove platform
homologous
IL_7RQB_078
NA
IL_6SPG_0761/A/2041:2043,
1/A/2599:2602
No text annotation
homologous
IL_5J7L_321
NA
IL_6SPG_0771/A/2054:2056,
1/A/2429:2430
Single bulged U
homologous
IL_4WF9_080
IL_97561.3
IL_6SPG_0781/A/2057:2058,
1/A/2425:2428
Minor groove platform
homologous
IL_5J7L_324
NA
IL_6SPG_0791/A/2068:2070,
1/A/2223:2226
Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_6SPG_0801/A/2072:2074,
1/A/2219:2221
Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_6SPG_0841/A/2189:2191,
1/A/2207:2208
Single bulged U
homologous
IL_5J7L_331
NA
IL_6SPG_0851/A/2284:2286,
1/A/2304:2308
No text annotation
homologous
IL_5J7L_332
NA
IL_6SPG_0861/A/2337:2340,
1/A/2351:2354
Double sheared
homologous
IL_5J7L_333
NA
IL_6SPG_0871/A/2388:2390,
1/A/2401:2402
Single bulged U
geometric
IL_5LYS_008
IL_97561.3
IL_6SPG_0881/A/2440:2441,
1/A/2485:2487
Single stack bend
geometric
IL_4WF9_089
IL_15011.2
IL_6SPG_0891/A/2441:2442,
1/A/2483:2485
Major groove platform
homologous
IL_7RQB_092
NA
IL_6SPG_0901/A/2444:2446,
1/A/2480:2481
Major groove platform
homologous
IL_4WF9_091
IL_48076.8
IL_6SPG_0911/A/2446:2448,
1/A/2476:2480
Major groove minor groove platform with extra cWW
geometric
IL_5J7L_337
NA
IL_6SPG_0921/A/2453:2457,
1/A/2467:2471
Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_6SPG_0931/A/2494:2495,
1/A/2567:2569
Major groove platform
homologous
IL_4WF9_094
IL_46637.2
IL_6SPG_0941/A/2497:2499,
1/A/2561:2565
Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_6SPG_0951/A/2499:2500,
1/A/2558:2561
No text annotation
geometric
IL_5J7L_341
NA
IL_6SPG_0961/A/2509:2510,
1/A/2527:2530
Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_6SPG_0971/A/2578:2579,
1/A/2588:2590
Single bulged A
homologous
IL_5J7L_344
NA
IL_6SPG_0981/A/2623:2627,
1/A/2761:2769
tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.4
IL_6SPG_0991/A/2639:2645,
1/A/2650:2655
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7A0S_094
IL_16458.6
IL_6SPG_1001/A/2667:2671,
1/A/2712:2714
C-loop
homologous
IL_4WF9_101
IL_63596.12
IL_6SPG_1011/A/2674:2678,
1/A/2705:2709
UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_82016.1
IL_6SPG_1021/A/2682:2683,
1/A/2698:2701
Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_6SPG_1031/A/2724:2729,
1/A/2749:2754
UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_6SPG_1041/A/2793:2798,
1/A/2876:2879
No text annotation
geometric
IL_5J7L_351
NA
IL_6SPG_1851/A/2825:2826,
1/A/2865:2867
Major groove intercalation
homologous
IL_5J7L_352
NA
IL_6SPG_1061/A/2830:2833,
1/A/2857:2861
Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_6SPG_1071/A/2834:2840,
1/A/2851:2856
No text annotation
IL_6SPG_1941/B/17:18,
1/B/65:67
Major groove intercalation
homologous
IL_4WF9_112
IL_14190.2
IL_6SPG_1091/B/23:28,
1/B/56:60
No text annotation
homologous
IL_5J7L_356
NA
IL_6SPG_1111/B/34:38,
1/B/44:48
Symmetric double minor groove platform
geometric
IL_5NS3_002
IL_58103.12
IL_6SPG_1121/B/71:79,
1/B/97:105
Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_6SPG_1131/a/30:32,
1/a/546:547
Single bulged G
homologous
IL_6CZR_113
NA
IL_6SPG_1141/a/44:45,
1/a/390:392
Single bulged A
homologous
IL_5J7L_002
NA
IL_6SPG_1151/a/47:52,
1/a/353:355
No text annotation
geometric
IL_5J7L_003
NA
IL_6SPG_1161/a/54:56,
1/a/350:351
Minor groove platform
homologous
IL_4LFB_004
IL_34520.3
IL_6SPG_1171/a/63:66,
1/a/97:98
Multiple bulged bases
homologous
IL_4LFB_005
IL_71421.2
IL_6SPG_1181/a/67:69,
1/a/94:96
Isolated non-canonical cWW pair
geometric
IL_3RW6_004
IL_01003.3
IL_6SPG_1191/a/70:75,
1/a/88:93
No text annotation
geometric
IL_5J7L_057
NA
IL_6SPG_1201/a/122:125,
1/a/225:227
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_6SPG_1211/a/126:130,
1/a/221:224
No text annotation
homologous
IL_4LFB_008
IL_60988.2
IL_6SPG_1221/a/138:140,
1/a/170:172
Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_6SPG_1231/a/141:147,
1/a/162:169
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_6SPG_1241/a/197:200,
1/a/207:208
Minor groove platform
geometric
IL_3MXH_005
IL_87975.1
IL_6SPG_1251/a/236:241,
1/a/271:278
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_6SPG_1951/a/243:246,
1/a/268:269
No text annotation
homologous
IL_6CZR_405
NA
IL_6SPG_1271/a/286:289,
1/a/296:302
No text annotation
IL_6SPG_1961/a/361:363,
1/a/386:387
Single bulged U
geometric
IL_5J7L_017
NA
IL_6SPG_1281/a/364:371,
1/a/380:385
No text annotation
IL_6SPG_1291/a/403:410,
1/a/421:427
No text annotation
homologous
IL_5J7L_020
NA
IL_6SPG_1301/a/434:436,
1/a/486:491
No text annotation
homologous
IL_5J7L_021
NA
IL_6SPG_1311/a/440:444,
1/a/477:482
tSH-tHW-tWW
homologous
IL_5J7L_022
NA
IL_6SPG_1321/a/444:447,
1/a/473:477
No text annotation
IL_6SPG_1331/a/498:505,
1/a/534:535
SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_6SPG_1341/a/509:515,
1/a/522:530
Kink-turn related
geometric
IL_4V88_415
NA
IL_6SPG_1351/a/563:569,
1/a/874:875
No text annotation
homologous
IL_6CZR_134
NA
IL_6SPG_1361/a/574:578,
1/a/751:755
tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_6SPG_1371/a/587:590,
1/a/638:640
No text annotation
geometric
IL_6DME_003
IL_75527.2
IL_6SPG_1381/a/591:592,
1/a/634:637
Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_73108.2
IL_6SPG_1391/a/599:606,
1/a/622:627
No text annotation
homologous
IL_5J7L_030
NA
IL_6SPG_1401/a/648:649,
1/a/745:748
Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_74641.2
IL_6SPG_1411/a/652:653,
1/a/740:742
Single stack bend
homologous
IL_5J7L_032
NA
IL_6SPG_1971/a/656:660,
1/a/734:737
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_6SPG_1431/a/678:682,
1/a/693:700
Kink-turn
homologous
IL_5J7L_035
NA
IL_6SPG_1441/a/768:772,
1/a/798:799
Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_6SPG_1451/a/773:777,
1/a/793:797
tSH-tHW-tHS
homologous
IL_4LFB_033
IL_05821.1
IL_6SPG_1461/a/881:888,
1/a/899:904
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_6SPG_1981/a/916:917,
1/a/1387:1389
Single bulged A
homologous
IL_6CZR_147
NA
IL_6SPG_1481/a/919:921,
1/a/1384:1385
Single bulged G
homologous
IL_5J7L_040
NA
IL_6SPG_1491/a/927:929,
1/a/1374:1378
Minor groove platform
homologous
IL_5J7L_041
NA
IL_6SPG_1991/a/947:948,
1/a/1220:1222
No text annotation
homologous
IL_6CZR_150
NA
IL_6SPG_1511/a/987:991,
1/a/1038:1039
Minor groove platform
geometric
IL_5J7L_043
NA
IL_6SPG_1541/a/1042:1044,
1/a/1202:1203
No text annotation
homologous
IL_6CZR_152
NA
IL_6SPG_1551/a/1046:1050,
1/a/1198:1200
Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_6SPG_1561/a/1051:1052,
1/a/1193:1197
Minor groove platform
homologous
IL_5J7L_048
NA
IL_6SPG_1571/a/1054:1055,
1/a/1189:1191
Single bulged A
homologous
IL_5J7L_049
NA
IL_6SPG_1581/a/1055:1057,
1/a/1187:1189
Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.3
IL_6SPG_1591/a/1118:1122,
1/a/1138:1143
No text annotation
homologous
IL_5J7L_051
NA
IL_6SPG_1601/a/1123:1126,
1/a/1136:1137
Minor groove platform
homologous
IL_5J7L_052
NA
IL_6SPG_1611/a/1240:1247,
1/a/1278:1285
No text annotation
IL_6SPG_1621/a/1249:1252,
1/a/1271:1276
180 degree turn
homologous
IL_4LFB_052
IL_08849.1
IL_6SPG_1631/a/1253:1257,
1/a/1266:1270
Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_6SPG_1641/a/1297:1302,
1/a/1323:1328
No text annotation
homologous
IL_4LFB_055
IL_57885.2
IL_6SPG_1651/a/1393:1395,
1/a/1495:1498
No text annotation
geometric
IL_5J7L_058
NA
IL_6SPG_1661/a/1395:1398,
1/a/1491:1495
No text annotation
geometric
IL_4V88_464
NA
IL_6SPG_1671/a/1399:1401,
1/a/1488:1490
Isolated non-canonical cWW pair
geometric
IL_3GM7_003
IL_01003.3
IL_6SPG_1681/a/1401:1403,
1/a/1485:1488
Decoding loop related
geometric
IL_2ET8_003
IL_55553.2
IL_6SPG_1691/a/1406:1408,
1/a/1480:1482
Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_6SPG_1701/a/1410:1413,
1/a/1475:1478
Double sheared
homologous
IL_5J7L_062
NA
IL_6SPG_1711/a/1424:1429,
1/a/1460:1464
Triple sheared related
homologous
IL_5J7L_063
NA
IL_6SPG_1721/a/1434:1436,
1/a/1454:1455
Single bulged A
homologous
IL_5J7L_064
NA
IL_6SPG_1731/a/1439:1442,
1/a/1449:1451
No text annotation
homologous
IL_5J7L_065
NA

Problematic loops

#loop idProblemSequence
IL_6SPG_025No text annotation
IL_6SPG_031No text annotation
IL_6SPG_175No text annotation
IL_6SPG_032No text annotation
IL_6SPG_037No text annotation
IL_6SPG_042No text annotation
IL_6SPG_177No text annotation
IL_6SPG_192No text annotation
IL_6SPG_043No text annotation
IL_6SPG_044Tandem non-canonical cWW pairs
IL_6SPG_056tSH-tHH-tHS
IL_6SPG_181No text annotation
IL_6SPG_081No text annotation
IL_6SPG_182No text annotation
IL_6SPG_183No text annotation
IL_6SPG_082No text annotation
IL_6SPG_083No text annotation
IL_6SPG_184Isolated non-canonical cWW contact
IL_6SPG_105Isolated non-canonical cWW with bulges
IL_6SPG_108No text annotation
IL_6SPG_110Major groove minor groove platform; mini C-loop
IL_6SPG_186Tandem non-canonical cWW pairs
IL_6SPG_126No text annotation
IL_6SPG_142No text annotation
IL_6SPG_187No text annotation
IL_6SPG_147Isolated non-canonical cWW with bulges
IL_6SPG_188No text annotation
IL_6SPG_150Isolated non-canonical cWW pair
IL_6SPG_152Single stack bend
IL_6SPG_153No text annotation
IL_6SPG_189No text annotation
IL_6SPG_190No text annotation
IL_6SPG_191Triple sheared with non-canonical cWW

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6SPG_0011/A/30:31,
1/A/465:472,
1/A/500:501
No text annotation
homologous
J3_7RQB_001
NA
J3_6SPG_0251/A/30:31,
1/A/465:475,
1/A/487:501
No text annotation
homologous
J3_9DFE_002
J3_17917.1
J3_6SPG_0261/A/32:35,
1/A/436:452,
1/A/459:464
No text annotation
homologous
J3_9DFE_003
J3_07616.1
J3_6SPG_0021/A/56:57,
1/A/70:76,
1/A/110:114
No text annotation
homologous
J3_5J7L_037
NA
J3_6SPG_0031/A/673:679,
1/A/763:765,
1/A/781:784
No text annotation
homologous
J3_7A0S_004
J3_46658.1
J3_6SPG_0041/A/688:690,
1/A/722:726,
1/A/750:753
No text annotation
homologous
J3_7RQB_005
NA
J3_6SPG_0061/A/1285:1290,
1/A/1615:1617,
1/A/1629:1632
No text annotation
homologous
J3_5J7L_041
NA
J3_6SPG_0071/A/1293:1296,
1/A/1595:1601,
1/A/1610:1612
No text annotation
homologous
J3_7RQB_008
NA
J3_6SPG_0271/A/1331:1337,
1/A/1368:1372,
1/A/1389:1390
No text annotation
homologous
J3_7A0S_018
J3_94309.1
J3_6SPG_0281/A/1411:1416,
1/A/1554:1555,
1/A/1558:1564
No text annotation
homologous
J3_5J7L_069
NA
J3_6SPG_0081/A/2078:2080,
1/A/2183:2187,
1/A/2210:2215
Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_6SPG_0291/A/2269:2271,
1/A/2371:2382,
1/A/2408:2414
No text annotation
homologous
J3_5J7L_070
NA
J3_6SPG_0091/A/2282:2284,
1/A/2308:2310,
1/A/2319:2324
No text annotation
homologous
J3_5J7L_045
NA
J3_6SPG_0301/A/2282:2286,
1/A/2304:2310,
1/A/2319:2324
No text annotation
homologous
J3_5J7L_071
NA
J3_6SPG_0101/A/2504:2507,
1/A/2532:2534,
1/A/2548:2554
No text annotation
homologous
J3_5J7L_046
NA
J3_6SPG_0111/A/2776:2778,
1/A/2792:2793,
1/A/2879:2881
No text annotation
homologous
J3_5J7L_047
NA
J3_6SPG_0121/A/2801:2802,
1/A/2818:2823,
1/A/2869:2873
No text annotation
J3_6SPG_0131/B/10:16,
1/B/68:69,
1/B/107:110
No text annotation
homologous
J3_7A0S_021
J3_47324.1
J3_6SPG_0401/a/46:47,
1/a/355:361,
1/a/387:389
No text annotation
geometric
J3_4LFB_010
J3_58657.1
J3_6SPG_0411/a/46:52,
1/a/353:361,
1/a/387:389
No text annotation
homologous
J3_4LFB_014
J3_63856.1
J3_6SPG_0151/a/580:582,
1/a/645:648,
1/a/748:749
No text annotation
homologous
J3_5J7L_002
NA
J3_6SPG_0321/a/580:582,
1/a/645:649,
1/a/745:749
No text annotation
homologous
J3_4LFB_015
J3_17385.5
J3_6SPG_0421/a/666:671,
1/a/707:719,
1/a/726:728
No text annotation
J3_6SPG_0161/a/820:823,
1/a/851:855,
1/a/862:868
No text annotation
homologous
J3_5J7L_004
NA
J3_6SPG_0341/a/930:933,
1/a/1338:1344,
1/a/1366:1373
No text annotation
homologous
J3_5J7L_052
NA
J3_6SPG_0351/a/937:940,
1/a/1229:1231,
1/a/1331:1334
No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_6SPG_0431/a/949:956,
1/a/967:978,
1/a/1215:1219
No text annotation
homologous
J3_5J7L_006
NA
J3_6SPG_0191/a/984:987,
1/a/1039:1041,
1/a/1204:1209
No text annotation
homologous
J3_5J7L_007
NA
J3_6SPG_0371/a/984:991,
1/a/1038:1041,
1/a/1204:1209
No text annotation
homologous
J3_4LFB_016
J3_28881.1
J3_6SPG_0211/a/1057:1062,
1/a/1101:1107,
1/a/1181:1187
No text annotation
homologous
J3_5J7L_008
NA
J3_6SPG_0441/a/1067:1068,
1/a/1077:1080,
1/a/1093:1096
No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_6SPG_0231/a/1110:1112,
1/a/1149:1155,
1/a/1169:1178
No text annotation
homologous
J3_4LFB_018
J3_40706.1
J3_6SPG_0241/a/1231:1235,
1/a/1290:1297,
1/a/1328:1331
No text annotation
homologous
J3_5J7L_011
NA
J4_6SPG_0011/A/268:274,
1/A/354:366,
1/A/390:398,
1/A/411:415
No text annotation
J4_6SPG_0021/A/291:295,
1/A/310:313,
1/A/317:319,
1/A/331:335
No text annotation
homologous
J4_7A0S_002
J4_16174.1
J4_6SPG_0141/A/1257:1263,
1/A/1281:1282,
1/A/1635:1638,
1/A/1996:1997
No text annotation
homologous
J4_5J7L_021
NA
J4_6SPG_0041/A/1297:1301,
1/A/1325:1330,
1/A/1391:1392,
1/A/1587:1594
No text annotation
homologous
J4_5J7L_022
NA
J4_6SPG_0051/A/1300:1301,
1/A/1325:1330,
1/A/1391:1392,
1/A/1587:1593
No text annotation
homologous
J4_5J7L_023
NA
J4_6SPG_0061/A/1431:1432,
1/A/1453:1454,
1/A/1512:1513,
1/A/1536:1537
No text annotation
homologous
J4_5J7L_024
NA
J4_6SPG_0071/A/1759:1763,
1/A/1775:1779,
1/A/1814:1817,
1/A/1962:1966
No text annotation
homologous
J4_5J7L_025
NA
J4_6SPG_0081/A/1820:1822,
1/A/1892:1893,
1/A/1911:1920,
1/A/1954:1959
No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_6SPG_0091/A/2272:2276,
1/A/2330:2334,
1/A/2357:2359,
1/A/2368:2370
No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_6SPG_0101/A/2630:2633,
1/A/2661:2663,
1/A/2718:2722,
1/A/2756:2758
No text annotation
homologous
J4_4WF9_009
J4_77044.5
J4_6SPG_0111/a/109:116,
1/a/233:234,
1/a/280:283,
1/a/305:306
No text annotation
homologous
J4_6CZR_027
NA
J4_6SPG_0151/a/137:138,
1/a/172:178,
1/a/187:192,
1/a/213:214
No text annotation
J4_6SPG_0131/a/569:571,
1/a/758:763,
1/a/804:815,
1/a/873:874
No text annotation
homologous
J4_4LFB_003
J4_14595.1
J5_6SPG_0091/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:150,
1/A/176:178
No text annotation
homologous
J5_5J7L_013
NA
J5_6SPG_0101/A/522:524,
1/A/550:554,
1/A/567:569,
1/A/1248:1249,
1/A/2004:2005
No text annotation
homologous
J5_5J7L_014
NA
J5_6SPG_0031/A/574:579,
1/A/658:661,
1/A/799:802,
1/A/1182:1183,
1/A/1237:1243
No text annotation
homologous
J5_5J7L_015
NA
J5_6SPG_0041/A/1664:1672,
1/A/1696:1697,
1/A/1738:1739,
1/A/1743:1751,
1/A/1975:1977
No text annotation
homologous
J5_5J7L_016
NA
J5_6SPG_0051/A/2044:2051,
1/A/2433:2440,
1/A/2487:2494,
1/A/2569:2575,
1/A/2593:2598
No text annotation
J5_6SPG_0111/A/2061:2064,
1/A/2230:2233,
1/A/2245:2246,
1/A/2268:2269,
1/A/2414:2422
No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_6SPG_0121/a/36:39,
1/a/397:400,
1/a/430:434,
1/a/491:494,
1/a/539:542
No text annotation
homologous
J5_5J7L_001
NA
J5_6SPG_0131/a/58:61,
1/a/100:107,
1/a/308:310,
1/a/331:333,
1/a/344:348
No text annotation
homologous
J5_4LFB_002
J5_58574.1
J6_6SPG_0011/A/45:46,
1/A/179:183,
1/A/214:224,
1/A/231:235,
1/A/262:266,
1/A/417:424
No text annotation
J6_6SPG_0031/A/2061:2064,
1/A/2230:2233,
1/A/2245:2246,
1/A/2268:2271,
1/A/2371:2382,
1/A/2408:2422
No text annotation
J6_6SPG_0021/A/2061:2064,
1/A/2230:2233,
1/A/2245:2247,
1/A/2267:2271,
1/A/2371:2382,
1/A/2408:2422
No text annotation
J7_6SPG_0011/A/8:15,
1/A/516:522,
1/A/2005:2010,
1/A/2027:2030,
1/A/2612:2617,
1/A/2775:2776,
1/A/2881:2882
No text annotation
J7_6SPG_0021/A/807:812,
1/A/825:828,
1/A/930:936,
1/A/961:966,
1/A/977:981,
1/A/1154:1155,
1/A/1172:1177
No text annotation

Problematic loops

#loop idProblemSequence
J3_6SPG_039No text annotation
J3_6SPG_005No text annotation
J3_6SPG_014No text annotation
J3_6SPG_031No text annotation
J3_6SPG_033No text annotation
J3_6SPG_017No text annotation
J3_6SPG_018No text annotation
J3_6SPG_036No text annotation
J3_6SPG_020No text annotation
J3_6SPG_038No text annotation
J3_6SPG_022No text annotation
J4_6SPG_003No text annotation
J4_6SPG_012No text annotation
J5_6SPG_001No text annotation
J5_6SPG_002No text annotation
J5_6SPG_006No text annotation
J5_6SPG_007No text annotation
J5_6SPG_008No text annotation

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