HL_6SPG_012

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GCACGAGAAAC

Length

11 nucleotides

Bulged bases

6SPG|1|A|G|377, 6SPG|1|A|A|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_012 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.2731

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6SPG|1|A|G|373
6SPG|1|A|C|374
6SPG|1|A|A|375
6SPG|1|A|C|376
6SPG|1|A|G|377
6SPG|1|A|A|378
6SPG|1|A|G|379
6SPG|1|A|A|380
6SPG|1|A|A|381
6SPG|1|A|A|382
6SPG|1|A|C|383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28