HL_6SPG_013

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6SPG|1|A|G|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1523

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6SPG|1|A|G|401
6SPG|1|A|G|402
6SPG|1|A|A|403
6SPG|1|A|C|404
6SPG|1|A|C|405
6SPG|1|A|A|406
6SPG|1|A|U|407
6SPG|1|A|C|408

Current chains

Chain A

23S ribosomal RNA

Nearby chains