HL_6SPG_023

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

6SPG|1|A|A|771, 6SPG|1|A|G|774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_023 not in the Motif Atlas

Geometric match to HL_6JQ6_004

Geometric discrepancy: 0.3415

The information below is about HL_6JQ6_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

6SPG|1|A|U|769
6SPG|1|A|G|770
6SPG|1|A|A|771
6SPG|1|A|A|772
6SPG|1|A|A|773
6SPG|1|A|G|774
6SPG|1|A|G|775

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2