HL_6SPG_042

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

AUUUACU

Length

7 nucleotides

Bulged bases

6SPG|1|A|C|1719

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_042 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3549

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SPG|1|A|A|1714
6SPG|1|A|U|1715
6SPG|1|A|U|1716
6SPG|1|A|U|1717
6SPG|1|A|A|1718
6SPG|1|A|C|1719
6SPG|1|A|U|1720

Current chains

Chain A

23S ribosomal RNA

Nearby chains