HL_6SPG_067

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GAAGACUAC

Length

9 nucleotides

Bulged bases

6SPG|1|A|A|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_067 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1456

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6SPG|1|A|G|2806
6SPG|1|A|A|2807
6SPG|1|A|A|2808
6SPG|1|A|G|2809
6SPG|1|A|A|2810
6SPG|1|A|C|2811
6SPG|1|A|U|2812
6SPG|1|A|A|2813
6SPG|1|A|C|2814

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17