HL_6SPG_079

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6SPG|1|a|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_079 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.1799

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

6SPG|1|a|C|336
6SPG|1|a|U|337
6SPG|1|a|A|338
6SPG|1|a|C|339
6SPG|1|a|G|340
6SPG|1|a|G|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19