HL_6SPG_091

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

6SPG|1|a|G|965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SPG_091 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2688

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6SPG|1|a|G|957
6SPG|1|a|A|958
6SPG|1|a|A|959
6SPG|1|a|G|960
6SPG|1|a|C|961
6SPG|1|a|A|962
6SPG|1|a|A|963
6SPG|1|a|C|964
6SPG|1|a|G|965
6SPG|1|a|C|966

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain m

30S ribosomal protein S13