HL_6SV4_004

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6SV4|1|2|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_004 not in the Motif Atlas

Geometric match to HL_6CZR_075

Geometric discrepancy: 0.3118

The information below is about HL_6CZR_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.4

Basepair signature

cWW-F-F

Number of instances in this motif group

28

Unit IDs

6SV4|1|2|C|190
6SV4|1|2|C|191
6SV4|1|2|U|192
6SV4|1|2|U|193
6SV4|1|2|U|194
6SV4|1|2|G|195

Current chains

Chain 2

18S rRNA

Nearby chains

Chain V

40S ribosomal protein S8-A