6SV4 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6SV4_003 | 1/2/154:160 | GNRA related | geometric HL_4V88_188 NA | |
| HL_6SV4_009 | 1/2/368:373 | No text annotation | geometric HL_4V88_194 NA | |
| HL_6SV4_020 | 1/2/900:909 | No text annotation | geometric HL_4V88_206 NA | |
| HL_6SV4_025 | 1/2/1121:1126 | GNRA | geometric HL_5J7L_004 NA | |
| HL_6SV4_026 | 1/2/1188:1197 | No text annotation | geometric HL_4V88_212 NA | |
| HL_6SV4_033 | 1/2/1550:1561 | No text annotation | geometric HL_4V88_219 NA | |
| HL_6SV4_037 | 1/2b/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_6SV4_038 | 1/2b/70:81 | No text annotation | homologous HL_8C3A_193 NA | |
| HL_6SV4_039 | 1/2b/154:160 | GNRA related | geometric HL_4V88_188 NA | |
| HL_6SV4_042 | 1/2b/243:250 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_6SV4_044 | 1/2b/330:338 | GNRA related | geometric HL_4V88_193 NA | |
| HL_6SV4_046 | 1/2b/393:404 | No text annotation | geometric HL_4V88_195 NA | |
| HL_6SV4_047 | 1/2b/414:419 | UNCG | geometric HL_4V88_196 NA | |
| HL_6SV4_048 | 1/2b/450:456 | No text annotation | geometric HL_7A0S_011 HL_75660.6 | |
| HL_6SV4_051 | 1/2b/569:574 | GNRA variation | geometric HL_4V88_200 NA | |
| HL_6SV4_054 | 1/2b/764:772 | No text annotation | geometric HL_4V88_203 NA | |
| HL_6SV4_055 | 1/2b/777:783 | No text annotation | ||
| HL_6SV4_057 | 1/2b/900:909 | No text annotation | geometric HL_4V88_206 NA | |
| HL_6SV4_058 | 1/2b/937:942 | GNRA | geometric HL_4LFB_016 HL_34789.1 | |
| HL_6SV4_059 | 1/2b/997:1007 | No text annotation | geometric HL_4LFB_017 HL_38491.1 | |
| HL_6SV4_061 | 1/2b/1084:1089 | GNRA with GA tSW pair | geometric HL_5VW1_003 HL_34789.1 | |
| HL_6SV4_062 | 1/2b/1121:1126 | GNRA | geometric HL_4NLF_001 HL_34789.1 | |
| HL_6SV4_063 | 1/2b/1188:1197 | No text annotation | geometric HL_4V88_212 NA | |
| HL_6SV4_064 | 1/2b/1238:1247 | Anticodon loop related | geometric HL_4V88_213 NA | |
| HL_6SV4_065 | 1/2b/1296:1301 | GNRA | geometric HL_4WF9_065 HL_34789.1 | |
| HL_6SV4_066 | 1/2b/1309:1316 | No text annotation | geometric HL_4V88_215 NA | |
| HL_6SV4_068 | 1/2b/1396:1402 | GNRA | geometric HL_5J7L_026 NA | |
| HL_6SV4_070 | 1/2b/1550:1561 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_6SV4_071 | 1/2b/1594:1602 | No text annotation | homologous HL_8P9A_223 NA | |
| HL_6SV4_073 | 1/2b/1778:1783 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6SV4_367 | 1/2c/7:17 | No text annotation | homologous HL_8P9A_190 HL_31940.1 | |
| HL_6SV4_081 | 1/2c/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_6SV4_368 | 1/2c/393:404 | No text annotation | homologous HL_8P9A_199 HL_86432.1 | |
| HL_6SV4_085 | 1/2c/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6SV4_087 | 1/2c/520:532 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6SV4_088 | 1/2c/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6SV4_091 | 1/2c/763:773 | No text annotation | ||
| HL_6SV4_094 | 1/2c/900:909 | No text annotation | homologous HL_4V88_206 NA | |
| HL_6SV4_095 | 1/2c/937:942 | GNRA | homologous HL_4V88_207 NA | |
| HL_6SV4_096 | 1/2c/997:1007 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6SV4_098 | 1/2c/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_6SV4_099 | 1/2c/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_6SV4_100 | 1/2c/1188:1197 | No text annotation | homologous HL_4V88_212 NA | |
| HL_6SV4_101 | 1/2c/1238:1247 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6SV4_103 | 1/2c/1309:1316 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6SV4_104 | 1/2c/1359:1364 | No text annotation | homologous HL_4V88_216 NA | |
| HL_6SV4_105 | 1/2c/1396:1402 | GNRA | homologous HL_4V88_217 NA | |
| HL_6SV4_106 | 1/2c/1501:1506 | GNRA | homologous HL_4V88_218 NA | |
| HL_6SV4_107 | 1/2c/1550:1561 | No text annotation | homologous HL_4V88_219 NA | |
| HL_6SV4_108 | 1/2c/1594:1602 | No text annotation | homologous HL_8P9A_223 NA | |
| HL_6SV4_110 | 1/2c/1778:1783 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_6SV4_112 | 1/BQ/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6SV4_114 | 1/BQ/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_6SV4_115 | 1/BQ/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6SV4_119 | 1/BQ/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6SV4_123 | 1/BQ/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_6SV4_128 | 1/BQ/763:768 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_6SV4_130 | 1/BQ/876:885 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6SV4_134 | 1/BQ/1076:1083 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_6SV4_142 | 1/BQ/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_6SV4_143 | 1/BQ/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6SV4_155 | 1/BQ/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6SV4_157 | 1/BQ/2164:2170 | GNRA | homologous HL_5TBW_047 NA | |
| HL_6SV4_158 | 1/BQ/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6SV4_165 | 1/BQ/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_6SV4_168 | 1/BQ/2693:2700 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6SV4_173 | 1/BQ/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_6SV4_174 | 1/BQ/2920:2926 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_6SV4_184 | 1/BR/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6SV4_186 | 1/BS/69:89 | No text annotation | homologous HL_8P9A_187 HL_68571.1 | |
| HL_6SV4_188 | 1/BS/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_6SV4_189 | 1/YQ/38:45 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_6SV4_190 | 1/YQ/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6SV4_191 | 1/YQ/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6SV4_192 | 1/YQ/132:136 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_6SV4_193 | 1/YQ/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6SV4_194 | 1/YQ/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6SV4_195 | 1/YQ/216:224 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_6SV4_196 | 1/YQ/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6SV4_197 | 1/YQ/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_6SV4_198 | 1/YQ/357:362 | GNRA | homologous HL_5TBW_010 NA | |
| HL_6SV4_199 | 1/YQ/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6SV4_201 | 1/YQ/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_6SV4_202 | 1/YQ/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_6SV4_203 | 1/YQ/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_6SV4_204 | 1/YQ/707:712 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6SV4_205 | 1/YQ/732:737 | GNRA | homologous HL_5TBW_017 NA | |
| HL_6SV4_206 | 1/YQ/763:768 | No text annotation | geometric HL_5TBW_018 NA | |
| HL_6SV4_207 | 1/YQ/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6SV4_208 | 1/YQ/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6SV4_209 | 1/YQ/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6SV4_210 | 1/YQ/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6SV4_212 | 1/YQ/1076:1083 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_6SV4_213 | 1/YQ/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6SV4_214 | 1/YQ/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6SV4_218 | 1/YQ/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6SV4_219 | 1/YQ/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6SV4_220 | 1/YQ/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6SV4_221 | 1/YQ/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6SV4_223 | 1/YQ/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6SV4_224 | 1/YQ/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6SV4_225 | 1/YQ/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6SV4_226 | 1/YQ/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_6SV4_371 | 1/YQ/1760:1765 | No text annotation | ||
| HL_6SV4_228 | 1/YQ/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6SV4_229 | 1/YQ/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_6SV4_230 | 1/YQ/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6SV4_231 | 1/YQ/1923:1928 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_6SV4_233 | 1/YQ/2110:2114 | No text annotation | homologous HL_5TBW_045 NA | |
| HL_6SV4_234 | 1/YQ/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6SV4_235 | 1/YQ/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6SV4_236 | 1/YQ/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6SV4_238 | 1/YQ/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6SV4_239 | 1/YQ/2369:2378 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_6SV4_243 | 1/YQ/2616:2624 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6SV4_244 | 1/YQ/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6SV4_245 | 1/YQ/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6SV4_246 | 1/YQ/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6SV4_247 | 1/YQ/2724:2732 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6SV4_248 | 1/YQ/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6SV4_249 | 1/YQ/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_6SV4_250 | 1/YQ/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6SV4_251 | 1/YQ/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6SV4_252 | 1/YQ/2920:2926 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6SV4_253 | 1/YQ/2963:2968 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6SV4_255 | 1/YQ/3068:3073 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_6SV4_256 | 1/YQ/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6SV4_258 | 1/YQ/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_6SV4_259 | 1/YQ/3303:3311 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_6SV4_362 | 1/YR/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6SV4_261 | 1/YR/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6SV4_262 | 1/YR/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6SV4_263 | 1/YS/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_17803.1 | |
| HL_6SV4_264 | 1/YS/69:89 | No text annotation | homologous HL_8P9A_187 HL_68571.1 | |
| HL_6SV4_265 | 1/YS/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6SV4_266 | 1/YS/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_6SV4_267 | 1/ZQ/38:45 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_6SV4_268 | 1/ZQ/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6SV4_269 | 1/ZQ/90:96 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6SV4_271 | 1/ZQ/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6SV4_272 | 1/ZQ/208:212 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_6SV4_273 | 1/ZQ/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_6SV4_274 | 1/ZQ/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_6SV4_275 | 1/ZQ/303:312 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_6SV4_276 | 1/ZQ/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_6SV4_277 | 1/ZQ/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6SV4_280 | 1/ZQ/640:649 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_6SV4_281 | 1/ZQ/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_6SV4_285 | 1/ZQ/844:849 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6SV4_286 | 1/ZQ/876:885 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_6SV4_287 | 1/ZQ/910:918 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_6SV4_288 | 1/ZQ/958:963 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_6SV4_291 | 1/ZQ/1126:1132 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6SV4_292 | 1/ZQ/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6SV4_296 | 1/ZQ/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6SV4_297 | 1/ZQ/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_6SV4_298 | 1/ZQ/1506:1512 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_6SV4_299 | 1/ZQ/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_6SV4_301 | 1/ZQ/1599:1608 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6SV4_302 | 1/ZQ/1634:1639 | GNRA | homologous HL_8C3A_036 NA | |
| HL_6SV4_303 | 1/ZQ/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6SV4_304 | 1/ZQ/1719:1725 | No text annotation | homologous HL_5TBW_038 NA | |
| HL_6SV4_306 | 1/ZQ/1792:1796 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6SV4_307 | 1/ZQ/1844:1851 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_6SV4_308 | 1/ZQ/1862:1868 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6SV4_309 | 1/ZQ/1923:1928 | UNCG | geometric HL_4V9F_044 HL_61337.1 | |
| HL_6SV4_311 | 1/ZQ/2110:2114 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6SV4_312 | 1/ZQ/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_6SV4_313 | 1/ZQ/2164:2170 | GNRA | homologous HL_5TBW_047 NA | |
| HL_6SV4_314 | 1/ZQ/2220:2225 | GNRA | homologous HL_5TBW_048 NA | |
| HL_6SV4_316 | 1/ZQ/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_6SV4_317 | 1/ZQ/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6SV4_321 | 1/ZQ/2616:2624 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_6SV4_322 | 1/ZQ/2633:2645 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_6SV4_323 | 1/ZQ/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6SV4_324 | 1/ZQ/2693:2700 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_6SV4_325 | 1/ZQ/2723:2733 | tRNA anticodon loop | geometric HL_6UGG_005 HL_11974.1 | |
| HL_6SV4_326 | 1/ZQ/2744:2749 | GNRA | homologous HL_8C3A_060 NA | |
| HL_6SV4_327 | 1/ZQ/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_6SV4_328 | 1/ZQ/2840:2848 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6SV4_329 | 1/ZQ/2897:2904 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6SV4_330 | 1/ZQ/2920:2926 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6SV4_331 | 1/ZQ/2963:2968 | GNRA | homologous HL_8C3A_065 NA | |
| HL_6SV4_333 | 1/ZQ/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6SV4_334 | 1/ZQ/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6SV4_336 | 1/ZQ/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_6SV4_337 | 1/ZQ/3303:3311 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_6SV4_339 | 1/ZR/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_6SV4_340 | 1/ZR/88:93 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6SV4_341 | 1/ZS/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_17803.1 | |
| HL_6SV4_342 | 1/ZS/69:89 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_6SV4_343 | 1/ZS/108:114 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6SV4_344 | 1/ZS/124:129 | No text annotation | homologous HL_5TBW_076 NA | |
| HL_6SV4_345 | 1/mb/13:23 | tRNA D-loop | homologous HL_5E81_211 NA | |
| HL_6SV4_346 | 1/mb/32:40 | tRNA anticodon loop | homologous HL_6UFM_002 NA | |
| HL_6SV4_349 | 1/mc/32:40 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_6SV4_352 | 1/n/31:39 | tRNA anticodon loop | homologous HL_7U2I_104 NA | |
| HL_6SV4_355 | 1/nb/31:39 | tRNA anticodon loop | homologous HL_6ORD_036 NA | |
| HL_6SV4_357 | 1/nc/13:22 | No text annotation | geometric HL_4V9F_003 HL_75660.6 | |
| HL_6SV4_358 | 1/nc/31:39 | tRNA anticodon loop | geometric HL_4YCO_002 HL_81376.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6SV4_001 | No text annotation | ||
| HL_6SV4_002 | No text annotation | ||
| HL_6SV4_366 | No text annotation | ||
| HL_6SV4_004 | No text annotation | ||
| HL_6SV4_005 | UNCG | ||
| HL_6SV4_006 | T-loop with 1 bulged base | ||
| HL_6SV4_007 | Mini UNCG | ||
| HL_6SV4_008 | GNRA related | ||
| HL_6SV4_010 | No text annotation | ||
| HL_6SV4_011 | UNCG | ||
| HL_6SV4_012 | No text annotation | ||
| HL_6SV4_013 | tRNA D-loop | ||
| HL_6SV4_014 | No text annotation | ||
| HL_6SV4_015 | GNRA variation | ||
| HL_6SV4_016 | No text annotation | ||
| HL_6SV4_017 | No text annotation | ||
| HL_6SV4_018 | No text annotation | ||
| HL_6SV4_019 | Pseudoknot geometry | ||
| HL_6SV4_021 | No text annotation | ||
| HL_6SV4_022 | No text annotation | ||
| HL_6SV4_023 | No text annotation | ||
| HL_6SV4_024 | GNRA | ||
| HL_6SV4_027 | Anticodon loop related | ||
| HL_6SV4_028 | No text annotation | ||
| HL_6SV4_029 | No text annotation | ||
| HL_6SV4_030 | No text annotation | ||
| HL_6SV4_031 | GNRA | ||
| HL_6SV4_032 | No text annotation | ||
| HL_6SV4_034 | No text annotation | ||
| HL_6SV4_035 | No text annotation | ||
| HL_6SV4_036 | No text annotation | ||
| HL_6SV4_040 | No text annotation | ||
| HL_6SV4_041 | UNCG | ||
| HL_6SV4_043 | Mini UNCG | ||
| HL_6SV4_045 | No text annotation | ||
| HL_6SV4_049 | No text annotation | ||
| HL_6SV4_050 | No text annotation | ||
| HL_6SV4_052 | No text annotation | ||
| HL_6SV4_053 | No text annotation | ||
| HL_6SV4_056 | Pseudoknot geometry | ||
| HL_6SV4_060 | No text annotation | ||
| HL_6SV4_067 | No text annotation | ||
| HL_6SV4_069 | GNRA | ||
| HL_6SV4_072 | No text annotation | ||
| HL_6SV4_074 | No text annotation | ||
| HL_6SV4_075 | No text annotation | ||
| HL_6SV4_076 | No text annotation | ||
| HL_6SV4_077 | No text annotation | ||
| HL_6SV4_078 | UNCG | ||
| HL_6SV4_079 | T-loop with 1 bulged base | ||
| HL_6SV4_080 | Mini UNCG | ||
| HL_6SV4_082 | No text annotation | ||
| HL_6SV4_083 | No text annotation | ||
| HL_6SV4_084 | UNCG | ||
| HL_6SV4_086 | No text annotation | ||
| HL_6SV4_089 | No text annotation | ||
| HL_6SV4_090 | No text annotation | ||
| HL_6SV4_092 | No text annotation | ||
| HL_6SV4_369 | No text annotation | ||
| HL_6SV4_093 | Pseudoknot geometry | ||
| HL_6SV4_097 | No text annotation | ||
| HL_6SV4_102 | GNRA | ||
| HL_6SV4_109 | No text annotation | ||
| HL_6SV4_111 | No text annotation | ||
| HL_6SV4_113 | No text annotation | ||
| HL_6SV4_116 | No text annotation | ||
| HL_6SV4_117 | T-loop with unstacked turn | ||
| HL_6SV4_118 | No text annotation | ||
| HL_6SV4_120 | GNRA | ||
| HL_6SV4_121 | GNRA | ||
| HL_6SV4_122 | No text annotation | ||
| HL_6SV4_370 | No text annotation | ||
| HL_6SV4_124 | T-loop with 2 stacked bulged bases | ||
| HL_6SV4_125 | No text annotation | ||
| HL_6SV4_126 | GNRA | ||
| HL_6SV4_127 | GNRA | ||
| HL_6SV4_129 | GNRA | ||
| HL_6SV4_131 | No text annotation | ||
| HL_6SV4_132 | Externally structured | ||
| HL_6SV4_133 | Externally structured | ||
| HL_6SV4_135 | GNRA | ||
| HL_6SV4_136 | No text annotation | ||
| HL_6SV4_137 | No text annotation | ||
| HL_6SV4_138 | GNRA wlth tandem sheared | ||
| HL_6SV4_139 | Mini UNCG | ||
| HL_6SV4_140 | GNRA | ||
| HL_6SV4_141 | T-loop with 2 stacked bulged bases | ||
| HL_6SV4_144 | No text annotation | ||
| HL_6SV4_145 | No text annotation | ||
| HL_6SV4_146 | GNRA | ||
| HL_6SV4_147 | No text annotation | ||
| HL_6SV4_148 | No text annotation | ||
| HL_6SV4_149 | No text annotation | ||
| HL_6SV4_150 | No text annotation | ||
| HL_6SV4_151 | No text annotation | ||
| HL_6SV4_152 | GNRA | ||
| HL_6SV4_153 | UNCG | ||
| HL_6SV4_154 | No text annotation | ||
| HL_6SV4_156 | No text annotation | ||
| HL_6SV4_159 | No text annotation | ||
| HL_6SV4_160 | No text annotation | ||
| HL_6SV4_161 | No text annotation | ||
| HL_6SV4_162 | No text annotation | ||
| HL_6SV4_163 | No text annotation | ||
| HL_6SV4_164 | No text annotation | ||
| HL_6SV4_166 | No text annotation | ||
| HL_6SV4_167 | No text annotation | ||
| HL_6SV4_169 | No text annotation | ||
| HL_6SV4_170 | GNRA | ||
| HL_6SV4_171 | Pseudoknot geometry | ||
| HL_6SV4_172 | No text annotation | ||
| HL_6SV4_175 | GNRA | ||
| HL_6SV4_176 | GNRA | ||
| HL_6SV4_177 | Ribsomal LSU H95 | ||
| HL_6SV4_178 | No text annotation | ||
| HL_6SV4_179 | No text annotation | ||
| HL_6SV4_180 | No text annotation | ||
| HL_6SV4_181 | No text annotation | ||
| HL_6SV4_182 | Mini UNCG | ||
| HL_6SV4_183 | No text annotation | ||
| HL_6SV4_185 | Pseudoknot with intercalation | ||
| HL_6SV4_187 | No text annotation | ||
| HL_6SV4_200 | No text annotation | ||
| HL_6SV4_211 | No text annotation | ||
| HL_6SV4_360 | No text annotation | ||
| HL_6SV4_215 | No text annotation | ||
| HL_6SV4_216 | GNRA wlth tandem sheared | ||
| HL_6SV4_217 | Mini UNCG | ||
| HL_6SV4_222 | No text annotation | ||
| HL_6SV4_227 | No text annotation | ||
| HL_6SV4_232 | No text annotation | ||
| HL_6SV4_237 | No text annotation | ||
| HL_6SV4_240 | No text annotation | ||
| HL_6SV4_241 | No text annotation | ||
| HL_6SV4_242 | No text annotation | ||
| HL_6SV4_254 | GNRA | ||
| HL_6SV4_361 | No text annotation | ||
| HL_6SV4_257 | Mini UNCG | ||
| HL_6SV4_260 | Mini UNCG | ||
| HL_6SV4_270 | No text annotation | ||
| HL_6SV4_278 | No text annotation | ||
| HL_6SV4_363 | No text annotation | ||
| HL_6SV4_279 | GNRA | ||
| HL_6SV4_282 | GNRA | ||
| HL_6SV4_283 | GNRA | ||
| HL_6SV4_284 | No text annotation | ||
| HL_6SV4_289 | No text annotation | ||
| HL_6SV4_364 | No text annotation | ||
| HL_6SV4_290 | No text annotation | ||
| HL_6SV4_293 | No text annotation | ||
| HL_6SV4_365 | No text annotation | ||
| HL_6SV4_294 | GNRA wlth tandem sheared | ||
| HL_6SV4_295 | Mini UNCG | ||
| HL_6SV4_300 | No text annotation | ||
| HL_6SV4_305 | No text annotation | ||
| HL_6SV4_372 | No text annotation | ||
| HL_6SV4_310 | No text annotation | ||
| HL_6SV4_315 | No text annotation | ||
| HL_6SV4_318 | No text annotation | ||
| HL_6SV4_319 | No text annotation | ||
| HL_6SV4_320 | No text annotation | ||
| HL_6SV4_332 | GNRA | ||
| HL_6SV4_335 | No text annotation | ||
| HL_6SV4_338 | Mini UNCG | ||
| HL_6SV4_347 | T-loop with 2 stacked bulged bases | ||
| HL_6SV4_348 | tRNA D-loop | ||
| HL_6SV4_350 | T-loop with 2 stacked bulged bases | ||
| HL_6SV4_351 | No text annotation | ||
| HL_6SV4_353 | T-loop with 2 stacked bulged bases | ||
| HL_6SV4_354 | No text annotation | ||
| HL_6SV4_356 | No text annotation | ||
| HL_6SV4_359 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6SV4_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_6SV4_004 | 1/2/42:48, 1/2/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_6SV4_010 | 1/2/117:122, 1/2/295:299 | No text annotation | geometric IL_4V88_393 NA | |
| IL_6SV4_014 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_6SV4_017 | 1/2/270:273, 1/2/283:285 | No text annotation | geometric IL_4V88_400 NA | |
| IL_6SV4_019 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_6SV4_020 | 1/2/318:323, 1/2/345:346 | No text annotation | geometric IL_5Y58_001 IL_45649.1 | |
| IL_6SV4_021 | 1/2/363:365, 1/2/376:381 | No text annotation | geometric IL_4V88_404 NA | |
| IL_6SV4_026 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6SV4_031 | 1/2/557:559, 1/2/586:587 | Single bulged U | homologous IL_4V88_414 NA | |
| IL_6SV4_032 | 1/2/562:568, 1/2/575:583 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6SV4_034 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.1 | |
| IL_6SV4_035 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | geometric IL_6CZR_145 NA | |
| IL_6SV4_038 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | geometric IL_4V88_423 NA | |
| IL_6SV4_042 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_6SV4_744 | 1/2/868:869, 1/2/958:960 | Single bulged U | geometric IL_7KVT_002 IL_97561.1 | |
| IL_6SV4_044 | 1/2/871:874, 1/2/953:956 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_6SV4_045 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6SV4_050 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | geometric IL_4V88_437 NA | |
| IL_6SV4_054 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6SV4_056 | 1/2/1157:1160, 1/2/1617:1621 | C-loop | geometric IL_4V88_443 NA | |
| IL_6SV4_059 | 1/2/1213:1215, 1/2/1448:1450 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.1 | |
| IL_6SV4_064 | 1/2/1276:1278, 1/2/1430:1436 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_6SV4_068 | 1/2/1339:1342, 1/2/1383:1385 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_6SV4_069 | 1/2/1345:1348, 1/2/1377:1380 | Minor groove platform | geometric IL_4V88_456 NA | |
| IL_6SV4_071 | 1/2/1389:1391, 1/2/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_6SV4_077 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6SV4_081 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_6SV4_088 | 1/2b/24:26, 1/2b/600:601 | Single bulged C | geometric IL_4V88_384 NA | |
| IL_6SV4_090 | 1/2b/37:41, 1/2b/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_6SV4_091 | 1/2b/42:48, 1/2b/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_6SV4_092 | 1/2b/50:52, 1/2b/428:429 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_6SV4_093 | 1/2b/58:63, 1/2b/87:89 | No text annotation | geometric IL_4V88_389 NA | |
| IL_6SV4_095 | 1/2b/109:112, 1/2b/302:305 | Tandem non-canonical cWW pairs | geometric IL_4V88_391 NA | |
| IL_6SV4_096 | 1/2b/113:116, 1/2b/300:301 | Major groove intercalation | geometric IL_1U9S_003 NA | |
| IL_6SV4_097 | 1/2b/117:122, 1/2b/295:299 | No text annotation | geometric IL_4V88_393 NA | |
| IL_6SV4_098 | 1/2b/143:149, 1/2b/165:172 | tWH-tWH-tHW-tHW | geometric IL_4V88_394 NA | |
| IL_6SV4_099 | 1/2b/150:152, 1/2b/162:164 | Isolated cWH basepair | geometric IL_4KQ0_005 NA | |
| IL_6SV4_101 | 1/2b/204:206, 1/2b/259:263 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_6SV4_102 | 1/2b/206:208, 1/2b/257:259 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 NA | |
| IL_6SV4_103 | 1/2b/265:267, 1/2b/288:289 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_6SV4_106 | 1/2b/311:316, 1/2b/348:355 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_6SV4_107 | 1/2b/318:323, 1/2b/345:346 | No text annotation | geometric IL_5Y58_001 IL_45649.1 | |
| IL_6SV4_108 | 1/2b/363:365, 1/2b/376:381 | No text annotation | geometric IL_4V88_404 NA | |
| IL_6SV4_109 | 1/2b/389:391, 1/2b/406:408 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_6SV4_110 | 1/2b/411:413, 1/2b/420:422 | Isolated near basepair | geometric IL_3NJ7_004 IL_42997.4 | |
| IL_6SV4_111 | 1/2b/439:441, 1/2b/463:464 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_6SV4_115 | 1/2b/517:518, 1/2b/533:535 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_6SV4_116 | 1/2b/518:520, 1/2b/532:533 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_6SV4_117 | 1/2b/550:557, 1/2b/587:588 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_6SV4_118 | 1/2b/557:559, 1/2b/586:587 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_6SV4_119 | 1/2b/562:568, 1/2b/575:583 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6SV4_120 | 1/2b/616:622, 1/2b/1104:1105 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.1 | |
| IL_6SV4_121 | 1/2b/624:626, 1/2b/973:975 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.1 | |
| IL_6SV4_694 | 1/2b/627:631, 1/2b/968:972 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_6SV4_746 | 1/2b/746:747, 1/2b/802:805 | No text annotation | homologous IL_8CRE_428 IL_73108.1 | |
| IL_6SV4_125 | 1/2b/748:751, 1/2b/798:801 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.1 | |
| IL_6SV4_126 | 1/2b/751:759, 1/2b/791:798 | No text annotation | geometric IL_4V88_425 NA | |
| IL_6SV4_128 | 1/2b/865:866, 1/2b/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_6SV4_698 | 1/2b/868:870, 1/2b/957:960 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_6SV4_130 | 1/2b/871:874, 1/2b/953:956 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_6SV4_131 | 1/2b/874:878, 1/2b/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_6SV4_132 | 1/2b/885:888, 1/2b/924:927 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
| IL_6SV4_133 | 1/2b/893:899, 1/2b/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_6SV4_134 | 1/2b/985:990, 1/2b/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_6SV4_135 | 1/2b/990:994, 1/2b/1010:1014 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_6SV4_136 | 1/2b/1034:1036, 1/2b/1095:1101 | No text annotation | geometric IL_4V88_437 NA | |
| IL_6SV4_137 | 1/2b/1041:1044, 1/2b/1074:1077 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6SV4_138 | 1/2b/1051:1053, 1/2b/1066:1067 | Single bulged U | geometric IL_3D2V_001 IL_97561.1 | |
| IL_6SV4_139 | 1/2b/1111:1118, 1/2b/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4LFB_034 IL_84044.1 | |
| IL_6SV4_140 | 1/2b/1146:1147, 1/2b/1630:1632 | Single bulged A | geometric IL_4LFB_035 IL_14190.1 | |
| IL_6SV4_141 | 1/2b/1149:1151, 1/2b/1627:1628 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6SV4_142 | 1/2b/1157:1160, 1/2b/1617:1621 | C-loop | geometric IL_1KOG_007 IL_63596.12 | |
| IL_6SV4_143 | 1/2b/1173:1175, 1/2b/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4V88_444 NA | |
| IL_6SV4_144 | 1/2b/1178:1179, 1/2b/1459:1461 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_6SV4_145 | 1/2b/1213:1215, 1/2b/1448:1450 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.1 | |
| IL_6SV4_146 | 1/2b/1224:1233, 1/2b/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_6SV4_148 | 1/2b/1268:1270, 1/2b/1440:1441 | Single bulged U | geometric IL_4V88_449 NA | |
| IL_6SV4_149 | 1/2b/1272:1276, 1/2b/1436:1438 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_6SV4_700 | 1/2b/1272:1278, 1/2b/1430:1438 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_6SV4_150 | 1/2b/1276:1278, 1/2b/1430:1436 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_6SV4_151 | 1/2b/1280:1281, 1/2b/1426:1428 | Single bulged A | geometric IL_4V88_452 NA | |
| IL_6SV4_152 | 1/2b/1290:1292, 1/2b/1323:1325 | Isolated cWH basepair | geometric IL_4V88_453 NA | |
| IL_6SV4_153 | 1/2b/1306:1308, 1/2b/1317:1318 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_6SV4_154 | 1/2b/1339:1342, 1/2b/1383:1385 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_6SV4_155 | 1/2b/1345:1348, 1/2b/1377:1380 | Minor groove platform | geometric IL_4V88_456 NA | |
| IL_6SV4_157 | 1/2b/1389:1391, 1/2b/1407:1412 | Major groove platform; stack outside cWW | geometric IL_4V88_458 NA | |
| IL_6SV4_158 | 1/2b/1480:1487, 1/2b/1519:1527 | No text annotation | geometric IL_4V88_459 NA | |
| IL_6SV4_160 | 1/2b/1495:1498, 1/2b/1509:1512 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_6SV4_161 | 1/2b/1540:1545, 1/2b/1566:1571 | No text annotation | geometric IL_4LFB_055 IL_57885.1 | |
| IL_6SV4_162 | 1/2b/1636:1638, 1/2b/1764:1767 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6SV4_163 | 1/2b/1638:1641, 1/2b/1760:1764 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6SV4_164 | 1/2b/1642:1644, 1/2b/1757:1759 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_6SV4_165 | 1/2b/1644:1647, 1/2b/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_28833.1 | |
| IL_6SV4_166 | 1/2b/1650:1652, 1/2b/1748:1750 | Isolated non-canonical cWW pair | geometric IL_4V88_467 NA | |
| IL_6SV4_167 | 1/2b/1653:1656, 1/2b/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_6SV4_168 | 1/2b/1656:1658, 1/2b/1743:1744 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6SV4_169 | 1/2b/1665:1667, 1/2b/1734:1736 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_6SV4_170 | 1/2b/1669:1672, 1/2b/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_6SV4_171 | 1/2b/1672:1674, 1/2b/1727:1729 | Isolated non-canonical cWW pair | geometric IL_4V88_467 NA | |
| IL_6SV4_172 | 1/2b/1675:1678, 1/2b/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_6SV4_173 | 1/2b/1678:1682, 1/2b/1719:1723 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_6SV4_174 | 1/2c/24:26, 1/2c/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_6SV4_175 | 1/2c/35:37, 1/2c/471:473 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_6SV4_702 | 1/2c/35:41, 1/2c/466:473 | No text annotation | ||
| IL_6SV4_176 | 1/2c/37:41, 1/2c/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_6SV4_177 | 1/2c/42:48, 1/2c/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_6SV4_178 | 1/2c/50:52, 1/2c/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6SV4_181 | 1/2c/109:112, 1/2c/302:305 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.1 | |
| IL_6SV4_192 | 1/2c/311:316, 1/2c/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6SV4_747 | 1/2c/318:323, 1/2c/345:346 | No text annotation | homologous IL_8CRE_409 IL_01372.1 | |
| IL_6SV4_194 | 1/2c/363:365, 1/2c/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6SV4_195 | 1/2c/389:391, 1/2c/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6SV4_196 | 1/2c/411:413, 1/2c/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_6SV4_197 | 1/2c/439:441, 1/2c/463:464 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_6SV4_203 | 1/2c/550:557, 1/2c/587:588 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_6SV4_204 | 1/2c/557:559, 1/2c/586:587 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_6SV4_205 | 1/2c/562:568, 1/2c/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6SV4_748 | 1/2c/616:622, 1/2c/1104:1105 | No text annotation | homologous IL_8CRE_424 IL_20847.1 | |
| IL_6SV4_206 | 1/2c/624:626, 1/2c/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6SV4_207 | 1/2c/627:631, 1/2c/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6SV4_211 | 1/2c/746:747, 1/2c/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_6SV4_749 | 1/2c/751:759, 1/2c/791:798 | No text annotation | homologous IL_8CRE_430 IL_59049.2 | |
| IL_6SV4_706 | 1/2c/866:870, 1/2c/957:962 | No text annotation | ||
| IL_6SV4_217 | 1/2c/871:874, 1/2c/953:956 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_6SV4_218 | 1/2c/874:878, 1/2c/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_6SV4_219 | 1/2c/885:888, 1/2c/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6SV4_220 | 1/2c/893:899, 1/2c/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_6SV4_221 | 1/2c/985:990, 1/2c/1014:1016 | Other IL | homologous IL_4V88_435 NA | |
| IL_6SV4_222 | 1/2c/990:994, 1/2c/1010:1014 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_6SV4_223 | 1/2c/1034:1036, 1/2c/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6SV4_224 | 1/2c/1041:1044, 1/2c/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_6SV4_225 | 1/2c/1051:1053, 1/2c/1066:1067 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_6SV4_226 | 1/2c/1111:1118, 1/2c/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6SV4_227 | 1/2c/1157:1160, 1/2c/1617:1621 | C-loop | homologous IL_4V88_443 NA | |
| IL_6SV4_229 | 1/2c/1178:1179, 1/2c/1459:1461 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6SV4_230 | 1/2c/1213:1215, 1/2c/1448:1450 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.1 | |
| IL_6SV4_231 | 1/2c/1224:1233, 1/2c/1252:1259 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_6SV4_232 | 1/2c/1234:1236, 1/2c/1249:1251 | No text annotation | homologous IL_4V88_448 NA | |
| IL_6SV4_233 | 1/2c/1268:1270, 1/2c/1440:1441 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_6SV4_234 | 1/2c/1272:1276, 1/2c/1436:1438 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_6SV4_750 | 1/2c/1272:1278, 1/2c/1430:1438 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_6SV4_751 | 1/2c/1276:1278, 1/2c/1430:1436 | No text annotation | homologous IL_8P9A_440 IL_93811.1 | |
| IL_6SV4_236 | 1/2c/1280:1281, 1/2c/1426:1428 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_6SV4_237 | 1/2c/1290:1292, 1/2c/1323:1325 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_6SV4_238 | 1/2c/1306:1308, 1/2c/1317:1318 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_6SV4_239 | 1/2c/1339:1342, 1/2c/1383:1385 | Isolated non-canonical cWW pair | homologous IL_4V88_455 NA | |
| IL_6SV4_752 | 1/2c/1345:1348, 1/2c/1377:1380 | No text annotation | homologous IL_8P9A_445 IL_78800.2 | |
| IL_6SV4_242 | 1/2c/1389:1391, 1/2c/1407:1412 | Major groove platform; stack outside cWW | homologous IL_4V88_458 NA | |
| IL_6SV4_243 | 1/2c/1480:1487, 1/2c/1519:1527 | No text annotation | homologous IL_4V88_459 NA | |
| IL_6SV4_244 | 1/2c/1488:1494, 1/2c/1513:1518 | 180 degree turn | homologous IL_4V88_460 NA | |
| IL_6SV4_245 | 1/2c/1495:1498, 1/2c/1509:1512 | Tandem non-canonical cWW pairs | homologous IL_4V88_461 NA | |
| IL_6SV4_246 | 1/2c/1540:1545, 1/2c/1566:1571 | No text annotation | homologous IL_4V88_462 NA | |
| IL_6SV4_247 | 1/2c/1638:1641, 1/2c/1760:1764 | No text annotation | homologous IL_4V88_464 NA | |
| IL_6SV4_248 | 1/2c/1642:1644, 1/2c/1757:1759 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6SV4_249 | 1/2c/1644:1647, 1/2c/1753:1757 | No text annotation | homologous IL_8CRE_469 IL_28833.1 | |
| IL_6SV4_250 | 1/2c/1650:1652, 1/2c/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6SV4_251 | 1/2c/1653:1656, 1/2c/1744:1747 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6SV4_252 | 1/2c/1656:1658, 1/2c/1743:1744 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6SV4_254 | 1/2c/1669:1672, 1/2c/1729:1732 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_6SV4_255 | 1/2c/1672:1674, 1/2c/1727:1729 | Isolated non-canonical cWW pair | homologous IL_4V88_472 NA | |
| IL_6SV4_256 | 1/2c/1675:1678, 1/2c/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_6SV4_264 | 1/BQ/125:127, 1/BQ/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6SV4_270 | 1/BQ/376:379, 1/BQ/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_6SV4_274 | 1/BQ/512:513, 1/BQ/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_6SV4_278 | 1/BQ/680:684, 1/BQ/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6SV4_285 | 1/BQ/828:829, 1/BQ/895:897 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_6SV4_295 | 1/BQ/991:997, 1/BQ/1052:1058 | No text annotation | homologous IL_8C3A_041 NA | |
| IL_6SV4_308 | 1/BQ/1194:1205, 1/BQ/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6SV4_313 | 1/BQ/1376:1378, 1/BQ/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6SV4_315 | 1/BQ/1388:1395, 1/BQ/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6SV4_318 | 1/BQ/1492:1495, 1/BQ/1835:1836 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.1 | |
| IL_6SV4_716 | 1/BQ/1501:1505, 1/BQ/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_6SV4_320 | 1/BQ/1532:1536, 1/BQ/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6SV4_756 | 1/BQ/1623:1624, 1/BQ/1819:1822 | No text annotation | homologous IL_8CRE_070 NA | |
| IL_6SV4_324 | 1/BQ/1627:1631, 1/BQ/1811:1816 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_6SV4_328 | 1/BQ/1694:1698, 1/BQ/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_6SV4_329 | 1/BQ/1702:1707, 1/BQ/1737:1743 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_6SV4_330 | 1/BQ/1711:1717, 1/BQ/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6SV4_332 | 1/BQ/1895:1897, 1/BQ/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6SV4_717 | 1/BQ/1898:1906, 1/BQ/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6SV4_334 | 1/BQ/1901:1906, 1/BQ/2333:2336 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_6SV4_340 | 1/BQ/2196:2199, 1/BQ/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_6SV4_342 | 1/BQ/2204:2206, 1/BQ/2237:2238 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_6SV4_343 | 1/BQ/2206:2210, 1/BQ/2235:2237 | No text annotation | ||
| IL_6SV4_344 | 1/BQ/2211:2217, 1/BQ/2228:2234 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_6SV4_346 | 1/BQ/2277:2288, 1/BQ/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_6SV4_349 | 1/BQ/2409:2411, 1/BQ/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6SV4_350 | 1/BQ/2412:2413, 1/BQ/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6SV4_352 | 1/BQ/2520:2526, 1/BQ/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6SV4_356 | 1/BQ/2718:2721, 1/BQ/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6SV4_362 | 1/BQ/2835:2839, 1/BQ/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6SV4_373 | 1/BQ/3047:3051, 1/BQ/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_6SV4_380 | 1/BQ/3179:3188, 1/BQ/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_6SV4_382 | 1/BQ/3225:3229, 1/BQ/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_6SV4_386 | 1/BQ/3318:3320, 1/BQ/3387:3388 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_6SV4_389 | 1/BQ/3332:3337, 1/BQ/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_6SV4_393 | 1/BR/15:16, 1/BR/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6SV4_394 | 1/BR/21:27, 1/BR/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6SV4_396 | 1/BR/29:30, 1/BR/47:49 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_6SV4_403 | 1/YQ/7:8, 1/YS/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_6SV4_404 | 1/YQ/13:15, 1/YS/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6SV4_405 | 1/YQ/27:28, 1/YQ/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6SV4_406 | 1/YQ/31:38, 1/YQ/45:53 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_6SV4_407 | 1/YQ/82:89, 1/YQ/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6SV4_408 | 1/YQ/123:124, 1/YQ/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6SV4_409 | 1/YQ/125:127, 1/YQ/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6SV4_410 | 1/YQ/163:165, 1/YQ/257:258 | Single stack bend | homologous IL_5TBW_009 NA | |
| IL_6SV4_412 | 1/YQ/177:178, 1/YQ/238:241 | No text annotation | geometric IL_5TBW_501 NA | |
| IL_6SV4_413 | 1/YQ/189:191, 1/YQ/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6SV4_414 | 1/YQ/337:339, 1/YS/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6SV4_415 | 1/YQ/376:379, 1/YQ/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_6SV4_416 | 1/YQ/404:410, 1/YS/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_6SV4_417 | 1/YQ/429:431, 1/YQ/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_6SV4_419 | 1/YQ/512:513, 1/YQ/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_6SV4_420 | 1/YQ/517:525, 1/YQ/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6SV4_421 | 1/YQ/531:538, 1/YQ/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_6SV4_722 | 1/YQ/668:670, 1/YQ/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_6SV4_423 | 1/YQ/680:684, 1/YQ/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6SV4_424 | 1/YQ/725:728, 1/YQ/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_6SV4_425 | 1/YQ/752:753, 1/YQ/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6SV4_426 | 1/YQ/755:756, 1/YQ/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_6SV4_427 | 1/YQ/758:763, 1/YQ/768:773 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_6SV4_428 | 1/YQ/803:805, 1/YQ/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6SV4_429 | 1/YQ/805:809, 1/YQ/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6SV4_430 | 1/YQ/828:829, 1/YQ/895:897 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_6SV4_431 | 1/YQ/833:834, 1/YQ/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6SV4_432 | 1/YQ/834:838, 1/YQ/855:859 | Triple sheared | geometric IL_4WF9_024 IL_15190.1 | |
| IL_6SV4_433 | 1/YQ/869:872, 1/YQ/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6SV4_434 | 1/YQ/873:875, 1/YQ/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6SV4_435 | 1/YQ/907:909, 1/YQ/919:923 | Multiple bulged bases | homologous IL_5TBW_033 NA | |
| IL_6SV4_436 | 1/YQ/954:956, 1/YQ/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6SV4_437 | 1/YQ/969:970, 1/YQ/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_6SV4_724 | 1/YQ/977:981, 1/YQ/1102:1104 | No text annotation | homologous IL_8P9A_264 IL_25463.2 | |
| IL_6SV4_439 | 1/YQ/983:985, 1/YQ/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6SV4_440 | 1/YQ/991:997, 1/YQ/1052:1058 | No text annotation | homologous IL_8C3A_041 NA | |
| IL_6SV4_441 | 1/YQ/997:998, 1/YQ/1050:1052 | Minor groove platform | geometric IL_6DLR_003 IL_34520.1 | |
| IL_6SV4_442 | 1/YQ/999:1004, 1/YQ/1046:1049 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_6SV4_443 | 1/YQ/1006:1009, 1/YQ/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_6SV4_444 | 1/YQ/1009:1011, 1/YQ/1039:1041 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6SV4_446 | 1/YQ/1069:1071, 1/YQ/1087:1089 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_6SV4_447 | 1/YQ/1074:1076, 1/YQ/1083:1084 | Single bulged A | geometric IL_5TBW_045 NA | |
| IL_6SV4_448 | 1/YQ/1120:1122, 1/YQ/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_6SV4_449 | 1/YQ/1167:1171, 1/YQ/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_6SV4_450 | 1/YQ/1173:1180, 1/YQ/1325:1326 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6SV4_451 | 1/YQ/1180:1182, 1/YQ/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_6SV4_452 | 1/YQ/1187:1194, 1/YQ/1314:1319 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_6SV4_453 | 1/YQ/1194:1205, 1/YQ/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6SV4_454 | 1/YQ/1207:1209, 1/YQ/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6SV4_458 | 1/YQ/1376:1378, 1/YQ/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6SV4_459 | 1/YQ/1385:1387, 1/YQ/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6SV4_460 | 1/YQ/1388:1395, 1/YQ/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6SV4_461 | 1/YQ/1398:1400, 1/YQ/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6SV4_462 | 1/YQ/1444:1450, 1/YQ/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6SV4_463 | 1/YQ/1492:1495, 1/YQ/1835:1836 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.1 | |
| IL_6SV4_726 | 1/YQ/1501:1505, 1/YQ/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_6SV4_465 | 1/YQ/1532:1536, 1/YQ/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6SV4_466 | 1/YQ/1618:1621, 1/YQ/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_6SV4_758 | 1/YQ/1623:1624, 1/YQ/1819:1822 | No text annotation | homologous IL_8CRE_070 NA | |
| IL_6SV4_468 | 1/YQ/1627:1631, 1/YQ/1811:1816 | No text annotation | geometric IL_5TBW_066 NA | |
| IL_6SV4_469 | 1/YQ/1645:1649, 1/YQ/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
| IL_6SV4_470 | 1/YQ/1661:1663, 1/YQ/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_6SV4_471 | 1/YQ/1669:1670, 1/YQ/1778:1780 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6SV4_472 | 1/YQ/1670:1671, 1/YQ/1776:1778 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6SV4_473 | 1/YQ/1694:1698, 1/YQ/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_6SV4_474 | 1/YQ/1702:1707, 1/YQ/1737:1743 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_6SV4_475 | 1/YQ/1711:1717, 1/YQ/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6SV4_476 | 1/YQ/1883:1889, 1/YQ/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6SV4_477 | 1/YQ/1895:1897, 1/YQ/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6SV4_478 | 1/YQ/1898:1901, 1/YQ/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6SV4_727 | 1/YQ/1898:1906, 1/YQ/2333:2337 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6SV4_479 | 1/YQ/1901:1906, 1/YQ/2333:2336 | Intercalated tWH | geometric IL_4V9F_062 IL_28217.1 | |
| IL_6SV4_480 | 1/YQ/1918:1923, 1/YQ/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6SV4_481 | 1/YQ/1940:1942, 1/YQ/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6SV4_482 | 1/YQ/1947:1948, 1/YQ/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6SV4_483 | 1/YQ/2128:2129, 1/YQ/2323:2325 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_6SV4_484 | 1/YQ/2156:2161, 1/YQ/2173:2180 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6SV4_485 | 1/YQ/2196:2199, 1/YQ/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_6SV4_486 | 1/YQ/2200:2201, 1/YQ/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6SV4_487 | 1/YQ/2204:2210, 1/YQ/2235:2238 | No text annotation | ||
| IL_6SV4_488 | 1/YQ/2211:2217, 1/YQ/2228:2234 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_6SV4_489 | 1/YQ/2276:2277, 1/YQ/2307:2310 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_6SV4_490 | 1/YQ/2277:2288, 1/YQ/2304:2307 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_6SV4_491 | 1/YQ/2391:2394, 1/YQ/2986:2988 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6SV4_492 | 1/YQ/2396:2398, 1/YQ/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_6SV4_493 | 1/YQ/2409:2411, 1/YQ/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6SV4_494 | 1/YQ/2412:2413, 1/YQ/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6SV4_728 | 1/YQ/2423:2425, 1/YQ/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6SV4_496 | 1/YQ/2520:2526, 1/YQ/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6SV4_497 | 1/YQ/2614:2615, 1/YQ/2625:2627 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6SV4_498 | 1/YQ/2666:2668, 1/YQ/2686:2690 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_6SV4_499 | 1/YQ/2714:2716, 1/YQ/2740:2741 | Single bulged A | geometric IL_5WWT_001 IL_14190.1 | |
| IL_6SV4_500 | 1/YQ/2718:2721, 1/YQ/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6SV4_501 | 1/YQ/2770:2773, 1/YQ/2787:2788 | Single stack bend | homologous IL_8C3A_110 NA | |
| IL_6SV4_502 | 1/YQ/2823:2824, 1/YQ/2865:2867 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_6SV4_503 | 1/YQ/2824:2826, 1/YQ/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_6SV4_504 | 1/YQ/2826:2828, 1/YQ/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_6SV4_729 | 1/YQ/2828:2830, 1/YQ/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_6SV4_506 | 1/YQ/2835:2839, 1/YQ/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6SV4_507 | 1/YQ/2876:2877, 1/YQ/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_6SV4_508 | 1/YQ/2879:2881, 1/YQ/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_6SV4_509 | 1/YQ/2881:2882, 1/YQ/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_6SV4_510 | 1/YQ/2889:2891, 1/YQ/2912:2914 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_6SV4_730 | 1/YQ/2889:2892, 1/YQ/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.3 | |
| IL_6SV4_511 | 1/YQ/2891:2892, 1/YQ/2909:2912 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_6SV4_512 | 1/YQ/2918:2920, 1/YQ/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6SV4_513 | 1/YQ/2960:2961, 1/YQ/2970:2972 | Single bulged A | geometric IL_1U9S_001 NA | |
| IL_6SV4_514 | 1/YQ/3004:3007, 1/YQ/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_6SV4_515 | 1/YQ/3012:3014, 1/YQ/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6SV4_516 | 1/YQ/3018:3025, 1/YQ/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_6SV4_517 | 1/YQ/3047:3051, 1/YQ/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_6SV4_518 | 1/YQ/3054:3059, 1/YQ/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_6SV4_519 | 1/YQ/3063:3064, 1/YQ/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_6SV4_520 | 1/YQ/3103:3107, 1/YQ/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_6SV4_521 | 1/YQ/3164:3166, 1/YQ/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_6SV4_522 | 1/YQ/3168:3170, 1/YQ/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_6SV4_523 | 1/YQ/3177:3179, 1/YQ/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_6SV4_524 | 1/YQ/3179:3188, 1/YQ/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_6SV4_525 | 1/YQ/3193:3194, 1/YQ/3197:3199 | Single bulged U | homologous IL_5TBW_125 NA | |
| IL_6SV4_526 | 1/YQ/3225:3229, 1/YQ/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_6SV4_528 | 1/YQ/3235:3238, 1/YQ/3249:3252 | Tandem non-canonical cWW pairs | homologous IL_5TBW_128 NA | |
| IL_6SV4_529 | 1/YQ/3300:3303, 1/YQ/3311:3314 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_6SV4_530 | 1/YQ/3318:3320, 1/YQ/3387:3388 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_6SV4_531 | 1/YQ/3324:3325, 1/YQ/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_6SV4_532 | 1/YQ/3328:3330, 1/YQ/3373:3378 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_6SV4_533 | 1/YQ/3332:3337, 1/YQ/3367:3371 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_6SV4_534 | 1/YQ/3340:3342, 1/YQ/3363:3364 | Multiple bulged bases | geometric IL_6IV9_001 IL_71421.1 | |
| IL_6SV4_535 | 1/YQ/3342:3345, 1/YQ/3360:3363 | Double sheared | geometric IL_4V9F_100 IL_58355.1 | |
| IL_6SV4_537 | 1/YR/15:16, 1/YR/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6SV4_538 | 1/YR/21:27, 1/YR/53:58 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6SV4_539 | 1/YR/28:29, 1/YR/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_6SV4_540 | 1/YR/29:30, 1/YR/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_6SV4_541 | 1/YR/32:36, 1/YR/41:45 | Symmetric double minor groove platform | homologous IL_5TBW_376 NA | |
| IL_6SV4_542 | 1/YR/72:80, 1/YR/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6SV4_543 | 1/YR/84:87, 1/YR/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6SV4_731 | 1/YS/64:66, 1/YS/93:96 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_68118.1 | |
| IL_6SV4_545 | 1/YS/68:69, 1/YS/89:91 | Single bulged U | geometric IL_5TBW_146 NA | |
| IL_6SV4_548 | 1/ZQ/13:15, 1/ZS/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6SV4_549 | 1/ZQ/27:28, 1/ZQ/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_6SV4_550 | 1/ZQ/31:38, 1/ZQ/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_6SV4_551 | 1/ZQ/82:89, 1/ZQ/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6SV4_552 | 1/ZQ/123:124, 1/ZQ/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_6SV4_553 | 1/ZQ/125:127, 1/ZQ/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_6SV4_557 | 1/ZQ/189:191, 1/ZQ/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6SV4_558 | 1/ZQ/337:339, 1/ZS/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_6SV4_559 | 1/ZQ/376:379, 1/ZQ/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_6SV4_560 | 1/ZQ/404:410, 1/ZS/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_6SV4_561 | 1/ZQ/429:431, 1/ZQ/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_6SV4_563 | 1/ZQ/512:513, 1/ZQ/577:579 | Single bulged A | homologous IL_5TBW_018 NA | |
| IL_6SV4_564 | 1/ZQ/517:525, 1/ZQ/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_6SV4_566 | 1/ZQ/668:670, 1/ZQ/792:794 | Isolated non-canonical cWW pair | homologous IL_5TBW_021 NA | |
| IL_6SV4_567 | 1/ZQ/680:684, 1/ZQ/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_6SV4_568 | 1/ZQ/725:728, 1/ZQ/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_6SV4_569 | 1/ZQ/752:753, 1/ZQ/779:781 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6SV4_570 | 1/ZQ/755:756, 1/ZQ/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_6SV4_572 | 1/ZQ/803:805, 1/ZQ/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6SV4_573 | 1/ZQ/805:809, 1/ZQ/931:938 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_6SV4_574 | 1/ZQ/828:829, 1/ZQ/895:897 | Single bulged A | geometric IL_4V9F_025 IL_14190.1 | |
| IL_6SV4_575 | 1/ZQ/833:834, 1/ZQ/859:861 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6SV4_576 | 1/ZQ/834:838, 1/ZQ/855:859 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_6SV4_577 | 1/ZQ/869:872, 1/ZQ/888:890 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6SV4_578 | 1/ZQ/873:875, 1/ZQ/886:887 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6SV4_579 | 1/ZQ/907:909, 1/ZQ/919:923 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_6SV4_580 | 1/ZQ/954:956, 1/ZQ/965:967 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6SV4_581 | 1/ZQ/969:970, 1/ZQ/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_6SV4_582 | 1/ZQ/977:981, 1/ZQ/1102:1104 | 180 degree turn | homologous IL_5TBW_036 NA | |
| IL_6SV4_583 | 1/ZQ/983:985, 1/ZQ/1099:1100 | Single bulged G | homologous IL_5TBW_037 NA | |
| IL_6SV4_584 | 1/ZQ/991:997, 1/ZQ/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5TBW_038 NA | |
| IL_6SV4_585 | 1/ZQ/997:998, 1/ZQ/1050:1052 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_6SV4_586 | 1/ZQ/999:1004, 1/ZQ/1046:1049 | C-loop | homologous IL_5TBW_040 NA | |
| IL_6SV4_587 | 1/ZQ/1006:1009, 1/ZQ/1041:1044 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_6SV4_588 | 1/ZQ/1009:1011, 1/ZQ/1039:1041 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6SV4_592 | 1/ZQ/1120:1122, 1/ZQ/1136:1138 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_6SV4_593 | 1/ZQ/1167:1171, 1/ZQ/1328:1332 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6SV4_594 | 1/ZQ/1173:1180, 1/ZQ/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_6SV4_595 | 1/ZQ/1180:1182, 1/ZQ/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_6SV4_596 | 1/ZQ/1187:1194, 1/ZQ/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_6SV4_597 | 1/ZQ/1194:1205, 1/ZQ/1299:1314 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6SV4_598 | 1/ZQ/1207:1209, 1/ZQ/1296:1297 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6SV4_599 | 1/ZQ/1218:1226, 1/ZQ/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
| IL_6SV4_602 | 1/ZQ/1376:1378, 1/ZQ/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_6SV4_603 | 1/ZQ/1385:1387, 1/ZQ/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6SV4_604 | 1/ZQ/1388:1395, 1/ZQ/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_6SV4_605 | 1/ZQ/1398:1400, 1/ZQ/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6SV4_606 | 1/ZQ/1444:1450, 1/ZQ/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6SV4_607 | 1/ZQ/1492:1495, 1/ZQ/1835:1836 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.1 | |
| IL_6SV4_736 | 1/ZQ/1501:1505, 1/ZQ/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_6SV4_609 | 1/ZQ/1532:1536, 1/ZQ/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6SV4_610 | 1/ZQ/1618:1621, 1/ZQ/1824:1826 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_6SV4_759 | 1/ZQ/1623:1624, 1/ZQ/1819:1822 | No text annotation | homologous IL_8CRE_070 NA | |
| IL_6SV4_612 | 1/ZQ/1627:1631, 1/ZQ/1811:1816 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_6SV4_613 | 1/ZQ/1645:1649, 1/ZQ/1806:1810 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_6SV4_614 | 1/ZQ/1661:1663, 1/ZQ/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_6SV4_615 | 1/ZQ/1669:1670, 1/ZQ/1778:1780 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_6SV4_616 | 1/ZQ/1670:1671, 1/ZQ/1776:1778 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_6SV4_617 | 1/ZQ/1694:1698, 1/ZQ/1747:1752 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_6SV4_618 | 1/ZQ/1702:1707, 1/ZQ/1737:1743 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_6SV4_619 | 1/ZQ/1711:1717, 1/ZQ/1727:1733 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6SV4_620 | 1/ZQ/1883:1889, 1/ZQ/2346:2349 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_6SV4_621 | 1/ZQ/1895:1897, 1/ZQ/2338:2340 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6SV4_622 | 1/ZQ/1898:1901, 1/ZQ/2336:2337 | Major groove platform; stack outside cWW | homologous IL_8C3A_082 NA | |
| IL_6SV4_737 | 1/ZQ/1898:1906, 1/ZQ/2333:2337 | No text annotation | homologous IL_8P9A_305 IL_80252.1 | |
| IL_6SV4_623 | 1/ZQ/1901:1906, 1/ZQ/2333:2336 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_6SV4_624 | 1/ZQ/1918:1923, 1/ZQ/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6SV4_625 | 1/ZQ/1940:1942, 1/ZQ/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6SV4_626 | 1/ZQ/1947:1948, 1/ZQ/2098:2101 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6SV4_627 | 1/ZQ/2128:2129, 1/ZQ/2323:2325 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_6SV4_628 | 1/ZQ/2156:2161, 1/ZQ/2173:2180 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_6SV4_629 | 1/ZQ/2196:2199, 1/ZQ/2245:2246 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_6SV4_630 | 1/ZQ/2200:2201, 1/ZQ/2241:2244 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6SV4_631 | 1/ZQ/2204:2210, 1/ZQ/2235:2238 | No text annotation | ||
| IL_6SV4_632 | 1/ZQ/2211:2217, 1/ZQ/2228:2234 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_6SV4_633 | 1/ZQ/2276:2277, 1/ZQ/2307:2310 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_6SV4_634 | 1/ZQ/2277:2288, 1/ZQ/2304:2307 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_6SV4_635 | 1/ZQ/2391:2394, 1/ZQ/2986:2988 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_6SV4_636 | 1/ZQ/2396:2398, 1/ZQ/2981:2984 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_6SV4_637 | 1/ZQ/2409:2411, 1/ZQ/2811:2812 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6SV4_638 | 1/ZQ/2412:2413, 1/ZQ/2807:2810 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6SV4_639 | 1/ZQ/2423:2425, 1/ZQ/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6SV4_640 | 1/ZQ/2520:2526, 1/ZQ/2584:2587 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_6SV4_641 | 1/ZQ/2614:2615, 1/ZQ/2625:2627 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_6SV4_642 | 1/ZQ/2666:2668, 1/ZQ/2686:2690 | Isolated tHS basepair with bulges | homologous IL_5TBW_099 NA | |
| IL_6SV4_644 | 1/ZQ/2718:2721, 1/ZQ/2735:2738 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_6SV4_646 | 1/ZQ/2823:2824, 1/ZQ/2865:2867 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_6SV4_738 | 1/ZQ/2823:2826, 1/ZQ/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_6SV4_647 | 1/ZQ/2824:2826, 1/ZQ/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
| IL_6SV4_648 | 1/ZQ/2826:2828, 1/ZQ/2862:2863 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_6SV4_739 | 1/ZQ/2828:2830, 1/ZQ/2858:2862 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_6SV4_650 | 1/ZQ/2835:2839, 1/ZQ/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6SV4_651 | 1/ZQ/2876:2877, 1/ZQ/2949:2951 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_6SV4_652 | 1/ZQ/2879:2881, 1/ZQ/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_6SV4_653 | 1/ZQ/2881:2882, 1/ZQ/2940:2943 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_6SV4_654 | 1/ZQ/2889:2891, 1/ZQ/2912:2914 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_6SV4_740 | 1/ZQ/2889:2892, 1/ZQ/2909:2914 | No text annotation | homologous IL_8P9A_338 IL_07469.3 | |
| IL_6SV4_655 | 1/ZQ/2891:2892, 1/ZQ/2909:2912 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_6SV4_656 | 1/ZQ/2918:2920, 1/ZQ/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_6SV4_657 | 1/ZQ/2960:2961, 1/ZQ/2970:2972 | Single bulged A | geometric IL_1U9S_001 NA | |
| IL_6SV4_658 | 1/ZQ/3004:3007, 1/ZQ/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_6SV4_659 | 1/ZQ/3012:3014, 1/ZQ/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_6SV4_660 | 1/ZQ/3018:3025, 1/ZQ/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6SV4_661 | 1/ZQ/3047:3051, 1/ZQ/3091:3094 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_6SV4_662 | 1/ZQ/3054:3059, 1/ZQ/3084:3088 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_6SV4_663 | 1/ZQ/3063:3064, 1/ZQ/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_6SV4_664 | 1/ZQ/3103:3107, 1/ZQ/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_6SV4_667 | 1/ZQ/3177:3179, 1/ZQ/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_6SV4_668 | 1/ZQ/3179:3188, 1/ZQ/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_6SV4_672 | 1/ZQ/3300:3303, 1/ZQ/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_6SV4_674 | 1/ZQ/3324:3325, 1/ZQ/3381:3383 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_6SV4_675 | 1/ZQ/3328:3332, 1/ZQ/3371:3378 | No text annotation | ||
| IL_6SV4_741 | 1/ZQ/3328:3337, 1/ZQ/3367:3378 | No text annotation | ||
| IL_6SV4_680 | 1/ZR/15:16, 1/ZR/63:65 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6SV4_681 | 1/ZR/21:26, 1/ZR/57:58 | No text annotation | ||
| IL_6SV4_742 | 1/ZR/21:27, 1/ZR/53:58 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_6SV4_682 | 1/ZR/26:27, 1/ZR/53:57 | C-loop | geometric IL_5J7L_018 NA | |
| IL_6SV4_683 | 1/ZR/28:29, 1/ZR/49:52 | Minor groove platform | geometric IL_5TBW_374 NA | |
| IL_6SV4_684 | 1/ZR/29:30, 1/ZR/47:49 | Single stack bend | homologous IL_5TBW_375 NA | |
| IL_6SV4_685 | 1/ZR/32:36, 1/ZR/41:45 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_6SV4_686 | 1/ZR/72:80, 1/ZR/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6SV4_687 | 1/ZR/84:87, 1/ZR/94:96 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6SV4_688 | 1/ZS/64:66, 1/ZS/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_6SV4_689 | 1/ZS/68:69, 1/ZS/89:91 | Single bulged U | homologous IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6SV4_001 | Single bulged C | ||
| IL_6SV4_002 | Isolated non-canonical cWW pair | ||
| IL_6SV4_005 | Minor groove platform | ||
| IL_6SV4_006 | No text annotation | ||
| IL_6SV4_007 | No text annotation | ||
| IL_6SV4_008 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_009 | Multiple bulged bases | ||
| IL_6SV4_011 | tWH-tWH-tHW-tHW | ||
| IL_6SV4_012 | Isolated cWH basepair | ||
| IL_6SV4_013 | Double sheared | ||
| IL_6SV4_015 | Isolated non-canonical cWW pair | ||
| IL_6SV4_016 | Single bulged A | ||
| IL_6SV4_018 | Single bulged U | ||
| IL_6SV4_690 | No text annotation | ||
| IL_6SV4_022 | Isolated non-canonical cWW pair | ||
| IL_6SV4_023 | Isolated near basepair | ||
| IL_6SV4_024 | Single bulged U | ||
| IL_6SV4_025 | C-loop | ||
| IL_6SV4_027 | Other IL | ||
| IL_6SV4_028 | Minor groove platform | ||
| IL_6SV4_029 | Minor groove platform | ||
| IL_6SV4_030 | SSU/LSU pseudoknot | ||
| IL_6SV4_033 | No text annotation | ||
| IL_6SV4_036 | Isolated non-canonical cWW pair | ||
| IL_6SV4_037 | No text annotation | ||
| IL_6SV4_039 | Isolated non-canonical cWW pair | ||
| IL_6SV4_040 | No text annotation | ||
| IL_6SV4_041 | No text annotation | ||
| IL_6SV4_743 | Isolated cWH basepair | ||
| IL_6SV4_691 | No text annotation | ||
| IL_6SV4_043 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_692 | Isolated cWH basepair | ||
| IL_6SV4_046 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_047 | Kink-turn related | ||
| IL_6SV4_048 | Other IL | ||
| IL_6SV4_049 | tSH-tHW-tHS | ||
| IL_6SV4_051 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_052 | Single bulged U | ||
| IL_6SV4_053 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6SV4_055 | Single bulged G | ||
| IL_6SV4_057 | Isolated non-canonical cWW pair | ||
| IL_6SV4_058 | Minor groove platform | ||
| IL_6SV4_060 | Kink-turn | ||
| IL_6SV4_061 | No text annotation | ||
| IL_6SV4_062 | Single bulged U | ||
| IL_6SV4_063 | Isolated cWS basepair | ||
| IL_6SV4_065 | Single bulged A | ||
| IL_6SV4_066 | Isolated cWH basepair | ||
| IL_6SV4_067 | Minor groove platform | ||
| IL_6SV4_745 | Isolated non-canonical cWW pair | ||
| IL_6SV4_070 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_072 | No text annotation | ||
| IL_6SV4_073 | 180 degree turn | ||
| IL_6SV4_074 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_075 | No text annotation | ||
| IL_6SV4_076 | No text annotation | ||
| IL_6SV4_078 | Isolated non-canonical cWW pair | ||
| IL_6SV4_693 | No text annotation | ||
| IL_6SV4_079 | No text annotation | ||
| IL_6SV4_080 | Isolated non-canonical cWW pair | ||
| IL_6SV4_082 | Single bulged U | ||
| IL_6SV4_083 | Isolated non-canonical cWW pair | ||
| IL_6SV4_084 | Double sheared | ||
| IL_6SV4_085 | Isolated non-canonical cWW pair | ||
| IL_6SV4_086 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_087 | Triple sheared | ||
| IL_6SV4_089 | Isolated non-canonical cWW pair | ||
| IL_6SV4_094 | No text annotation | ||
| IL_6SV4_100 | Double sheared | ||
| IL_6SV4_104 | No text annotation | ||
| IL_6SV4_105 | Single bulged U | ||
| IL_6SV4_112 | C-loop | ||
| IL_6SV4_113 | Single bulged G | ||
| IL_6SV4_114 | No text annotation | ||
| IL_6SV4_122 | No text annotation | ||
| IL_6SV4_123 | Isolated non-canonical cWW pair | ||
| IL_6SV4_695 | Single stack bend | ||
| IL_6SV4_696 | Single stack bend | ||
| IL_6SV4_697 | No text annotation | ||
| IL_6SV4_124 | Major groove minor groove platform with extra cWW | ||
| IL_6SV4_127 | Isolated non-canonical cWW pair | ||
| IL_6SV4_129 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_699 | No text annotation | ||
| IL_6SV4_147 | No text annotation | ||
| IL_6SV4_701 | No text annotation | ||
| IL_6SV4_156 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_159 | 180 degree turn | ||
| IL_6SV4_179 | No text annotation | ||
| IL_6SV4_180 | No text annotation | ||
| IL_6SV4_182 | Multiple bulged bases | ||
| IL_6SV4_183 | No text annotation | ||
| IL_6SV4_184 | tWH-tWH-tHW-tHW | ||
| IL_6SV4_185 | No text annotation | ||
| IL_6SV4_186 | Double sheared | ||
| IL_6SV4_187 | Major groove platform with extra cWW | ||
| IL_6SV4_188 | Isolated non-canonical cWW pair | ||
| IL_6SV4_189 | Single bulged A | ||
| IL_6SV4_190 | No text annotation | ||
| IL_6SV4_191 | Single bulged U | ||
| IL_6SV4_193 | No text annotation | ||
| IL_6SV4_703 | No text annotation | ||
| IL_6SV4_198 | C-loop | ||
| IL_6SV4_199 | Single bulged G | ||
| IL_6SV4_200 | No text annotation | ||
| IL_6SV4_704 | No text annotation | ||
| IL_6SV4_201 | Minor groove platform | ||
| IL_6SV4_202 | Minor groove platform | ||
| IL_6SV4_208 | Isolated non-canonical cWW pair | ||
| IL_6SV4_209 | Single stack bend | ||
| IL_6SV4_210 | Single stack bend | ||
| IL_6SV4_705 | No text annotation | ||
| IL_6SV4_212 | No text annotation | ||
| IL_6SV4_213 | No text annotation | ||
| IL_6SV4_214 | Isolated cWH basepair | ||
| IL_6SV4_215 | Isolated non-canonical cWW pair | ||
| IL_6SV4_216 | Decoding loop related | ||
| IL_6SV4_707 | No text annotation | ||
| IL_6SV4_228 | Isolated non-canonical cWW pair | ||
| IL_6SV4_708 | No text annotation | ||
| IL_6SV4_709 | No text annotation | ||
| IL_6SV4_235 | No text annotation | ||
| IL_6SV4_710 | No text annotation | ||
| IL_6SV4_240 | No text annotation | ||
| IL_6SV4_241 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_253 | Isolated non-canonical cWW pair | ||
| IL_6SV4_257 | Triple sheared | ||
| IL_6SV4_258 | Single bulged C | ||
| IL_6SV4_259 | Single bulged U | ||
| IL_6SV4_260 | No text annotation | ||
| IL_6SV4_261 | tSH-tHW-tHH-tHS | ||
| IL_6SV4_262 | No text annotation | ||
| IL_6SV4_263 | No text annotation | ||
| IL_6SV4_265 | Single stack bend | ||
| IL_6SV4_711 | Other IL | ||
| IL_6SV4_753 | No text annotation | ||
| IL_6SV4_266 | No text annotation | ||
| IL_6SV4_267 | Major groove platform with intercalation | ||
| IL_6SV4_268 | Single bulged U | ||
| IL_6SV4_269 | Single bulged A | ||
| IL_6SV4_271 | Triple sheared with non-canonical cWW | ||
| IL_6SV4_272 | Isolated non-canonical cWW pair | ||
| IL_6SV4_273 | Kink-turn related | ||
| IL_6SV4_275 | No text annotation | ||
| IL_6SV4_276 | No text annotation | ||
| IL_6SV4_277 | Isolated non-canonical cWW pair | ||
| IL_6SV4_754 | UAA/GAN variation | ||
| IL_6SV4_279 | Triple sheared related | ||
| IL_6SV4_280 | Single bulged A | ||
| IL_6SV4_281 | Single bulged U | ||
| IL_6SV4_282 | No text annotation | ||
| IL_6SV4_283 | Isolated non-canonical cWW pair | ||
| IL_6SV4_284 | tHW-tHW cross-strand stack | ||
| IL_6SV4_286 | Single bulged G | ||
| IL_6SV4_287 | Triple sheared | ||
| IL_6SV4_288 | Major groove platform with extra cWW | ||
| IL_6SV4_289 | Single bulged U | ||
| IL_6SV4_290 | Multiple bulged bases | ||
| IL_6SV4_291 | Isolated non-canonical cWW pair | ||
| IL_6SV4_712 | No text annotation | ||
| IL_6SV4_292 | No text annotation | ||
| IL_6SV4_713 | No text annotation | ||
| IL_6SV4_293 | Kink-turn related | ||
| IL_6SV4_294 | Single bulged G | ||
| IL_6SV4_296 | Minor groove platform | ||
| IL_6SV4_297 | C-loop with bulged stacked A's | ||
| IL_6SV4_298 | No text annotation | ||
| IL_6SV4_299 | Isolated non-canonical cWW pair | ||
| IL_6SV4_300 | No text annotation | ||
| IL_6SV4_714 | No text annotation | ||
| IL_6SV4_755 | No text annotation | ||
| IL_6SV4_301 | Isolated non-canonical cWW pair | ||
| IL_6SV4_302 | Decoding loop related | ||
| IL_6SV4_303 | Isolated non-canonical cWW pair | ||
| IL_6SV4_304 | UAA/GAN | ||
| IL_6SV4_305 | SSU/LSU pseudoknot | ||
| IL_6SV4_306 | Single bulged U | ||
| IL_6SV4_307 | No text annotation | ||
| IL_6SV4_309 | Single bulged U | ||
| IL_6SV4_310 | Kink-turn | ||
| IL_6SV4_715 | No text annotation | ||
| IL_6SV4_311 | No text annotation | ||
| IL_6SV4_312 | Major groove platform with extra cWW | ||
| IL_6SV4_314 | Single bulged A | ||
| IL_6SV4_316 | Single bulged A | ||
| IL_6SV4_317 | No text annotation | ||
| IL_6SV4_319 | No text annotation | ||
| IL_6SV4_321 | Single stack bend | ||
| IL_6SV4_322 | No text annotation | ||
| IL_6SV4_323 | No text annotation | ||
| IL_6SV4_325 | Isolated non-canonical cWW pair | ||
| IL_6SV4_326 | Single bulged C | ||
| IL_6SV4_327 | Single stack bend | ||
| IL_6SV4_331 | No text annotation | ||
| IL_6SV4_333 | Major groove platform; stack outside cWW | ||
| IL_6SV4_335 | No text annotation | ||
| IL_6SV4_336 | Isolated non-canonical cWW pair | ||
| IL_6SV4_337 | No text annotation | ||
| IL_6SV4_338 | Single bulged A | ||
| IL_6SV4_339 | No text annotation | ||
| IL_6SV4_341 | Multiple bulged bases | ||
| IL_6SV4_345 | Bulged stacked bases | ||
| IL_6SV4_347 | No text annotation | ||
| IL_6SV4_348 | Major groove platform with intercalation | ||
| IL_6SV4_351 | No text annotation | ||
| IL_6SV4_353 | Single bulged A | ||
| IL_6SV4_354 | No text annotation | ||
| IL_6SV4_355 | Single bulged A | ||
| IL_6SV4_357 | Single stack bend | ||
| IL_6SV4_358 | Major groove platform | ||
| IL_6SV4_718 | No text annotation | ||
| IL_6SV4_359 | Isolated non-canonical cWW pair | ||
| IL_6SV4_360 | Major groove platform | ||
| IL_6SV4_719 | Major groove minor groove platform with extra cWW | ||
| IL_6SV4_361 | No text annotation | ||
| IL_6SV4_363 | Major groove platform | ||
| IL_6SV4_364 | Isolated non-canonical cWW with bulges | ||
| IL_6SV4_365 | No text annotation | ||
| IL_6SV4_366 | Isolated non-canonical cWW pair | ||
| IL_6SV4_367 | Major groove platform with intercalation | ||
| IL_6SV4_368 | Isolated non-canonical cWW pair | ||
| IL_6SV4_369 | Single bulged A | ||
| IL_6SV4_370 | Double sheared | ||
| IL_6SV4_371 | Isolated non-canonical cWW pair | ||
| IL_6SV4_372 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6SV4_374 | UAA/GAN related | ||
| IL_6SV4_375 | No text annotation | ||
| IL_6SV4_376 | UAA/GAN | ||
| IL_6SV4_377 | Isolated non-canonical cWW pair | ||
| IL_6SV4_378 | Isolated non-canonical cWW pair | ||
| IL_6SV4_379 | Single bulged A | ||
| IL_6SV4_381 | Single bulged U | ||
| IL_6SV4_383 | Isolated non-canonical cWW pair | ||
| IL_6SV4_384 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_385 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_387 | Single bulged U | ||
| IL_6SV4_388 | No text annotation | ||
| IL_6SV4_390 | Major groove intercalation | ||
| IL_6SV4_391 | Double sheared | ||
| IL_6SV4_392 | Multiple bulged bases | ||
| IL_6SV4_395 | Minor groove platform | ||
| IL_6SV4_397 | Symmetric double minor groove platform | ||
| IL_6SV4_398 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6SV4_720 | No text annotation | ||
| IL_6SV4_399 | Isolated non-canonical cWW pair | ||
| IL_6SV4_400 | Isolated non-canonical cWW pair | ||
| IL_6SV4_401 | Single bulged U | ||
| IL_6SV4_402 | No text annotation | ||
| IL_6SV4_721 | No text annotation | ||
| IL_6SV4_757 | No text annotation | ||
| IL_6SV4_411 | No text annotation | ||
| IL_6SV4_418 | Kink-turn related | ||
| IL_6SV4_422 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_723 | Triple sheared related | ||
| IL_6SV4_438 | Kink-turn related | ||
| IL_6SV4_445 | Decoding loop related | ||
| IL_6SV4_455 | Kink-turn | ||
| IL_6SV4_725 | No text annotation | ||
| IL_6SV4_456 | No text annotation | ||
| IL_6SV4_457 | Major groove platform with extra cWW | ||
| IL_6SV4_464 | No text annotation | ||
| IL_6SV4_467 | No text annotation | ||
| IL_6SV4_495 | Double sheared | ||
| IL_6SV4_505 | No text annotation | ||
| IL_6SV4_527 | Isolated non-canonical cWW pair | ||
| IL_6SV4_536 | Multiple bulged bases | ||
| IL_6SV4_544 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_546 | No text annotation | ||
| IL_6SV4_547 | Single bulged C | ||
| IL_6SV4_554 | Single stack bend | ||
| IL_6SV4_732 | Other IL | ||
| IL_6SV4_733 | No text annotation | ||
| IL_6SV4_555 | No text annotation | ||
| IL_6SV4_556 | No text annotation | ||
| IL_6SV4_562 | Kink-turn related | ||
| IL_6SV4_565 | No text annotation | ||
| IL_6SV4_571 | No text annotation | ||
| IL_6SV4_734 | Isolated non-canonical cWW with bulges | ||
| IL_6SV4_589 | Decoding loop related | ||
| IL_6SV4_735 | No text annotation | ||
| IL_6SV4_590 | Isolated non-canonical cWW pair | ||
| IL_6SV4_591 | Isolated non-canonical cWW with bulges | ||
| IL_6SV4_600 | No text annotation | ||
| IL_6SV4_601 | Major groove platform with extra cWW | ||
| IL_6SV4_608 | No text annotation | ||
| IL_6SV4_611 | No text annotation | ||
| IL_6SV4_643 | Single bulged A | ||
| IL_6SV4_645 | Single stack bend | ||
| IL_6SV4_649 | No text annotation | ||
| IL_6SV4_665 | Isolated non-canonical cWW pair | ||
| IL_6SV4_666 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_669 | No text annotation | ||
| IL_6SV4_670 | Isolated non-canonical cWW pair | ||
| IL_6SV4_671 | Tandem non-canonical cWW pairs | ||
| IL_6SV4_673 | Single bulged U | ||
| IL_6SV4_676 | No text annotation | ||
| IL_6SV4_677 | Multiple bulged bases | ||
| IL_6SV4_678 | Double sheared; A in syn | ||
| IL_6SV4_679 | Multiple bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6SV4_002 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_6SV4_094 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_6SV4_003 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_6SV4_004 | 1/2/881:884, 1/2/928:936, 1/2/943:947 | No text annotation | homologous J3_4V88_033 NA | |
| J3_6SV4_006 | 1/2/1161:1164, 1/2/1581:1587, 1/2/1609:1616 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_6SV4_008 | 1/2/1180:1187, 1/2/1198:1209, 1/2/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6SV4_011 | 1/2/1293:1294, 1/2/1303:1306, 1/2/1318:1322 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_6SV4_097 | 1/2/1336:1338, 1/2/1386:1391, 1/2/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_6SV4_013 | 1/2/1470:1474, 1/2/1533:1540, 1/2/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J3_6SV4_014 | 1/2b/41:42, 1/2b/433:439, 1/2b/464:466 | No text annotation | homologous J3_8P9A_068 J3_58657.1 | |
| J3_6SV4_098 | 1/2b/213:228, 1/2b/237:243, 1/2b/250:252 | No text annotation | ||
| J3_6SV4_015 | 1/2b/633:635, 1/2b/861:865, 1/2b/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_6SV4_099 | 1/2b/633:635, 1/2b/861:866, 1/2b/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_6SV4_016 | 1/2b/760:763, 1/2b/773:775, 1/2b/785:790 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_6SV4_017 | 1/2b/881:884, 1/2b/928:936, 1/2b/943:947 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_6SV4_018 | 1/2b/1037:1039, 1/2b/1079:1083, 1/2b/1090:1094 | No text annotation | homologous J3_8C3A_037 NA | |
| J3_6SV4_019 | 1/2b/1161:1164, 1/2b/1581:1587, 1/2b/1609:1616 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_6SV4_020 | 1/2b/1168:1171, 1/2b/1468:1470, 1/2b/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6SV4_021 | 1/2b/1180:1187, 1/2b/1198:1209, 1/2b/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6SV4_022 | 1/2b/1215:1220, 1/2b/1263:1267, 1/2b/1442:1448 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_6SV4_023 | 1/2b/1283:1288, 1/2b/1327:1332, 1/2b/1419:1424 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_6SV4_131 | 1/2b/1293:1294, 1/2b/1303:1306, 1/2b/1318:1322 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_6SV4_025 | 1/2b/1336:1338, 1/2b/1386:1389, 1/2b/1412:1415 | No text annotation | homologous J3_8C3A_043 NA | |
| J3_6SV4_100 | 1/2b/1336:1338, 1/2b/1386:1391, 1/2b/1407:1415 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_6SV4_026 | 1/2b/1470:1474, 1/2b/1533:1540, 1/2b/1571:1574 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_6SV4_027 | 1/2c/41:42, 1/2c/433:439, 1/2c/464:466 | No text annotation | geometric J3_4V88_078 NA | |
| J3_6SV4_101 | 1/2c/41:48, 1/2c/431:439, 1/2c/464:466 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_6SV4_028 | 1/2c/633:635, 1/2c/861:866, 1/2c/962:966 | No text annotation | homologous J3_8C3A_034 NA | |
| J3_6SV4_103 | 1/2c/760:763, 1/2c/773:776, 1/2c/784:790 | No text annotation | ||
| J3_6SV4_029 | 1/2c/881:884, 1/2c/928:936, 1/2c/943:947 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_6SV4_030 | 1/2c/1037:1039, 1/2c/1079:1083, 1/2c/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J3_6SV4_031 | 1/2c/1161:1164, 1/2c/1581:1587, 1/2c/1609:1616 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6SV4_032 | 1/2c/1168:1171, 1/2c/1468:1470, 1/2c/1574:1577 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_6SV4_033 | 1/2c/1180:1187, 1/2c/1198:1209, 1/2c/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_6SV4_034 | 1/2c/1215:1220, 1/2c/1263:1267, 1/2c/1442:1448 | No text annotation | homologous J3_4V88_038 NA | |
| J3_6SV4_035 | 1/2c/1283:1288, 1/2c/1327:1332, 1/2c/1419:1424 | No text annotation | homologous J3_4V88_039 NA | |
| J3_6SV4_132 | 1/2c/1293:1294, 1/2c/1303:1306, 1/2c/1318:1322 | No text annotation | homologous J3_8CRE_083 J3_76043.4 | |
| J3_6SV4_037 | 1/2c/1336:1338, 1/2c/1386:1389, 1/2c/1412:1415 | No text annotation | homologous J3_4V88_040 NA | |
| J3_6SV4_104 | 1/2c/1336:1338, 1/2c/1386:1391, 1/2c/1407:1415 | No text annotation | ||
| J3_6SV4_038 | 1/2c/1470:1474, 1/2c/1533:1540, 1/2c/1571:1574 | No text annotation | homologous J3_4V88_041 NA | |
| J3_6SV4_039 | 1/BQ/113:123, 1/BQ/149:158, 1/BQ/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_6SV4_105 | 1/BQ/113:124, 1/BQ/144:158, 1/BQ/263:267 | No text annotation | ||
| J3_6SV4_106 | 1/BQ/340:356, 1/BQ/363:368, 1/BS/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_6SV4_040 | 1/BQ/369:376, 1/BQ/403:404, 1/BS/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6SV4_107 | 1/BQ/369:379, 1/BQ/390:404, 1/BS/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6SV4_041 | 1/BQ/502:503, 1/BQ/588:597, 1/BQ/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6SV4_043 | 1/BQ/829:831, 1/BQ/863:867, 1/BQ/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6SV4_046 | 1/BQ/1479:1485, 1/BQ/1857:1859, 1/BQ/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6SV4_047 | 1/BQ/1488:1491, 1/BQ/1837:1843, 1/BQ/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6SV4_048 | 1/BQ/1526:1531, 1/BQ/1591:1595, 1/BQ/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6SV4_108 | 1/BQ/1537:1542, 1/BQ/1551:1561, 1/BQ/1579:1584 | No text annotation | ||
| J3_6SV4_049 | 1/BQ/1631:1632, 1/BQ/1641:1649, 1/BQ/1806:1811 | No text annotation | ||
| J3_6SV4_051 | 1/BQ/2529:2532, 1/BQ/2547:2563, 1/BQ/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_76247.1 | |
| J3_6SV4_110 | 1/BQ/2651:2653, 1/BQ/2754:2765, 1/BQ/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6SV4_052 | 1/BQ/2664:2666, 1/BQ/2690:2692, 1/BQ/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6SV4_112 | 1/BQ/3171:3176, 1/BQ/3212:3220, 1/BQ/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_6SV4_055 | 1/BR/9:14, 1/BR/66:67, 1/BR/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6SV4_057 | 1/YQ/113:123, 1/YQ/149:158, 1/YQ/263:267 | No text annotation | homologous J3_8P9A_042 J3_69230.1 | |
| J3_6SV4_113 | 1/YQ/113:124, 1/YQ/144:158, 1/YQ/263:267 | No text annotation | ||
| J3_6SV4_114 | 1/YQ/185:189, 1/YQ/205:214, 1/YQ/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_6SV4_115 | 1/YQ/340:356, 1/YQ/363:368, 1/YS/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_6SV4_058 | 1/YQ/369:376, 1/YQ/403:404, 1/YS/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6SV4_116 | 1/YQ/369:379, 1/YQ/390:404, 1/YS/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6SV4_059 | 1/YQ/502:503, 1/YQ/588:597, 1/YQ/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6SV4_060 | 1/YQ/814:820, 1/YQ/905:907, 1/YQ/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6SV4_061 | 1/YQ/829:831, 1/YQ/863:867, 1/YQ/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6SV4_062 | 1/YQ/986:987, 1/YQ/1062:1066, 1/YQ/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_6SV4_064 | 1/YQ/1479:1485, 1/YQ/1857:1859, 1/YQ/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6SV4_065 | 1/YQ/1488:1491, 1/YQ/1837:1843, 1/YQ/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6SV4_066 | 1/YQ/1526:1531, 1/YQ/1591:1595, 1/YQ/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6SV4_117 | 1/YQ/1537:1542, 1/YQ/1551:1560, 1/YQ/1579:1584 | No text annotation | ||
| J3_6SV4_067 | 1/YQ/1631:1632, 1/YQ/1641:1645, 1/YQ/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6SV4_118 | 1/YQ/1654:1658, 1/YQ/1791:1792, 1/YQ/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_6SV4_068 | 1/YQ/2432:2435, 1/YQ/2512:2517, 1/YQ/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_6SV4_069 | 1/YQ/2529:2532, 1/YQ/2547:2563, 1/YQ/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_76247.1 | |
| J3_6SV4_119 | 1/YQ/2651:2653, 1/YQ/2754:2765, 1/YQ/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6SV4_070 | 1/YQ/2664:2666, 1/YQ/2690:2692, 1/YQ/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6SV4_071 | 1/YQ/2886:2889, 1/YQ/2914:2916, 1/YQ/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6SV4_120 | 1/YQ/3171:3176, 1/YQ/3212:3220, 1/YQ/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_6SV4_072 | 1/YQ/3298:3300, 1/YQ/3314:3318, 1/YQ/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_6SV4_073 | 1/YR/9:14, 1/YR/66:67, 1/YR/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6SV4_074 | 1/YS/44:45, 1/YS/58:64, 1/YS/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_6SV4_075 | 1/ZQ/113:123, 1/ZQ/149:158, 1/ZQ/263:267 | No text annotation | homologous J3_8P9A_042 J3_69230.1 | |
| J3_6SV4_121 | 1/ZQ/113:124, 1/ZQ/144:158, 1/ZQ/263:267 | No text annotation | ||
| J3_6SV4_122 | 1/ZQ/185:189, 1/ZQ/205:214, 1/ZQ/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_6SV4_123 | 1/ZQ/340:356, 1/ZQ/363:368, 1/ZS/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_6SV4_076 | 1/ZQ/369:376, 1/ZQ/403:404, 1/ZS/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6SV4_124 | 1/ZQ/369:379, 1/ZQ/390:404, 1/ZS/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6SV4_077 | 1/ZQ/502:503, 1/ZQ/588:597, 1/ZQ/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_6SV4_078 | 1/ZQ/814:820, 1/ZQ/905:907, 1/ZQ/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6SV4_079 | 1/ZQ/829:831, 1/ZQ/863:867, 1/ZQ/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6SV4_080 | 1/ZQ/986:987, 1/ZQ/1062:1066, 1/ZQ/1092:1098 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_6SV4_082 | 1/ZQ/1479:1485, 1/ZQ/1857:1859, 1/ZQ/1871:1874 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6SV4_083 | 1/ZQ/1488:1491, 1/ZQ/1837:1843, 1/ZQ/1852:1854 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_6SV4_084 | 1/ZQ/1526:1531, 1/ZQ/1591:1595, 1/ZQ/1612:1613 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6SV4_125 | 1/ZQ/1537:1542, 1/ZQ/1551:1560, 1/ZQ/1579:1584 | No text annotation | ||
| J3_6SV4_085 | 1/ZQ/1631:1632, 1/ZQ/1641:1645, 1/ZQ/1810:1811 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6SV4_126 | 1/ZQ/1654:1658, 1/ZQ/1791:1792, 1/ZQ/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_6SV4_086 | 1/ZQ/2432:2435, 1/ZQ/2512:2517, 1/ZQ/2590:2597 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_6SV4_087 | 1/ZQ/2529:2532, 1/ZQ/2547:2563, 1/ZQ/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_76247.1 | |
| J3_6SV4_127 | 1/ZQ/2651:2653, 1/ZQ/2754:2765, 1/ZQ/2793:2798 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6SV4_088 | 1/ZQ/2664:2666, 1/ZQ/2690:2692, 1/ZQ/2701:2706 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6SV4_089 | 1/ZQ/2886:2889, 1/ZQ/2914:2916, 1/ZQ/2930:2936 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_6SV4_133 | 1/ZQ/3171:3176, 1/ZQ/3212:3220, 1/ZQ/3265:3279 | No text annotation | ||
| J3_6SV4_090 | 1/ZQ/3298:3300, 1/ZQ/3314:3318, 1/ZQ/3388:3390 | No text annotation | homologous J3_5TBW_015 NA | |
| J3_6SV4_091 | 1/ZR/9:14, 1/ZR/66:67, 1/ZR/111:112 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_6SV4_092 | 1/ZS/44:45, 1/ZS/58:64, 1/ZS/96:100 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J4_6SV4_001 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_6SV4_002 | 1/2/622:624, 1/2/975:980, 1/2/1021:1032, 1/2/1103:1104 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_6SV4_003 | 1/2b/99:107, 1/2b/307:309, 1/2b/357:361, 1/2b/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_6SV4_004 | 1/2b/622:624, 1/2b/975:980, 1/2b/1021:1032, 1/2b/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J4_6SV4_005 | 1/2c/99:107, 1/2c/307:309, 1/2c/357:361, 1/2c/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_6SV4_045 | 1/2c/622:624, 1/2c/975:980, 1/2c/1021:1032, 1/2c/1103:1104 | No text annotation | homologous J4_8CRE_022 J4_14595.1 | |
| J4_6SV4_007 | 1/BQ/112:113, 1/BQ/267:272, 1/BQ/293:299, 1/BQ/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_6SV4_008 | 1/BQ/185:189, 1/BQ/205:208, 1/BQ/212:214, 1/BQ/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_6SV4_010 | 1/BQ/1492:1496, 1/BQ/1520:1525, 1/BQ/1614:1615, 1/BQ/1829:1836 | No text annotation | ||
| J4_6SV4_011 | 1/BQ/1495:1496, 1/BQ/1520:1525, 1/BQ/1614:1615, 1/BQ/1829:1835 | No text annotation | ||
| J4_6SV4_018 | 1/YQ/112:113, 1/YQ/267:272, 1/YQ/293:299, 1/YQ/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_6SV4_019 | 1/YQ/185:189, 1/YQ/205:208, 1/YQ/212:214, 1/YQ/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_6SV4_020 | 1/YQ/1451:1457, 1/YQ/1475:1476, 1/YQ/1877:1880, 1/YQ/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_6SV4_021 | 1/YQ/1492:1496, 1/YQ/1520:1525, 1/YQ/1614:1615, 1/YQ/1829:1836 | No text annotation | ||
| J4_6SV4_022 | 1/YQ/1495:1496, 1/YQ/1520:1525, 1/YQ/1614:1615, 1/YQ/1829:1835 | No text annotation | ||
| J4_6SV4_023 | 1/YQ/1674:1675, 1/YQ/1693:1694, 1/YQ/1752:1753, 1/YQ/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_6SV4_024 | 1/YQ/2130:2134, 1/YQ/2146:2150, 1/YQ/2186:2190, 1/YQ/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_6SV4_025 | 1/YQ/2192:2194, 1/YQ/2248:2249, 1/YQ/2267:2276, 1/YQ/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_6SV4_026 | 1/YQ/2654:2658, 1/YQ/2712:2714, 1/YQ/2741:2742, 1/YQ/2751:2753 | No text annotation | ||
| J4_6SV4_027 | 1/YQ/2654:2658, 1/YQ/2712:2716, 1/YQ/2740:2742, 1/YQ/2751:2753 | No text annotation | homologous J4_8P9A_019 J4_59590.1 | |
| J4_6SV4_028 | 1/YQ/3010:3012, 1/YQ/3042:3043, 1/YQ/3098:3100, 1/YQ/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_6SV4_029 | 1/ZQ/112:113, 1/ZQ/267:272, 1/ZQ/293:299, 1/ZQ/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_6SV4_030 | 1/ZQ/185:189, 1/ZQ/205:208, 1/ZQ/212:214, 1/ZQ/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_6SV4_031 | 1/ZQ/1451:1457, 1/ZQ/1475:1476, 1/ZQ/1877:1880, 1/ZQ/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_6SV4_032 | 1/ZQ/1492:1496, 1/ZQ/1520:1525, 1/ZQ/1614:1615, 1/ZQ/1829:1836 | No text annotation | ||
| J4_6SV4_033 | 1/ZQ/1495:1496, 1/ZQ/1520:1525, 1/ZQ/1614:1615, 1/ZQ/1829:1835 | No text annotation | ||
| J4_6SV4_034 | 1/ZQ/1674:1675, 1/ZQ/1693:1694, 1/ZQ/1752:1753, 1/ZQ/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_6SV4_035 | 1/ZQ/2130:2134, 1/ZQ/2146:2150, 1/ZQ/2186:2190, 1/ZQ/2317:2322 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_6SV4_036 | 1/ZQ/2192:2194, 1/ZQ/2248:2249, 1/ZQ/2267:2276, 1/ZQ/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_6SV4_037 | 1/ZQ/2654:2658, 1/ZQ/2712:2714, 1/ZQ/2741:2742, 1/ZQ/2751:2753 | No text annotation | ||
| J4_6SV4_038 | 1/ZQ/2654:2658, 1/ZQ/2712:2716, 1/ZQ/2740:2742, 1/ZQ/2751:2753 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_6SV4_039 | 1/ZQ/3010:3012, 1/ZQ/3042:3043, 1/ZQ/3098:3100, 1/ZQ/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_6SV4_040 | 1/mb/7:10, 1/mb/26:28, 1/mb/44:50, 1/mb/66:67 | tRNA junction | homologous J4_6UFG_001 NA | |
| J4_6SV4_041 | 1/mc/7:10, 1/mc/26:28, 1/mc/44:50, 1/mc/66:67 | tRNA junction | homologous J4_6UFG_001 NA | |
| J4_6SV4_043 | 1/nb/7:10, 1/nb/25:28, 1/nb/42:49, 1/nb/65:66 | No text annotation | homologous J4_4RDX_001 NA | |
| J5_6SV4_001 | 1/2/31:35, 1/2/473:479, 1/2/509:516, 1/2/536:546, 1/2/592:595 | No text annotation | ||
| J5_6SV4_002 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_6SV4_003 | 1/2/124:143, 1/2/172:182, 1/2/203:204, 1/2/263:265, 1/2/289:293 | No text annotation | ||
| J5_6SV4_004 | 1/2/636:641, 1/2/693:699, 1/2/739:744, 1/2/807:817, 1/2/854:860 | No text annotation | ||
| J5_6SV4_005 | 1/2b/31:35, 1/2b/473:479, 1/2b/509:516, 1/2b/536:546, 1/2b/592:595 | No text annotation | ||
| J5_6SV4_006 | 1/2b/54:57, 1/2b/90:97, 1/2b/386:388, 1/2b/409:411, 1/2b/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_6SV4_007 | 1/2b/124:143, 1/2b/172:182, 1/2b/203:204, 1/2b/263:265, 1/2b/289:293 | No text annotation | ||
| J5_6SV4_008 | 1/2b/124:143, 1/2b/172:182, 1/2b/203:204, 1/2b/263:267, 1/2b/288:293 | No text annotation | ||
| J5_6SV4_009 | 1/2b/636:642, 1/2b/692:698, 1/2b/740:744, 1/2b/807:822, 1/2b/850:860 | No text annotation | ||
| J5_6SV4_010 | 1/2c/31:35, 1/2c/473:479, 1/2c/509:516, 1/2c/536:546, 1/2c/592:595 | No text annotation | ||
| J5_6SV4_011 | 1/2c/31:41, 1/2c/466:479, 1/2c/509:516, 1/2c/536:546, 1/2c/592:595 | No text annotation | ||
| J5_6SV4_012 | 1/2c/54:57, 1/2c/90:97, 1/2c/386:388, 1/2c/409:411, 1/2c/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_6SV4_015 | 1/2c/636:642, 1/2c/692:698, 1/2c/740:744, 1/2c/807:822, 1/2c/850:860 | No text annotation | ||
| J5_6SV4_016 | 1/BQ/20:22, 1/BS/35:42, 1/BS/102:107, 1/BS/115:116, 1/BS/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_6SV4_017 | 1/BQ/658:663, 1/BQ/799:802, 1/BQ/941:944, 1/BQ/1375:1376, 1/BQ/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6SV4_018 | 1/BQ/675:678, 1/BQ/702:706, 1/BQ/713:721, 1/BQ/749:751, 1/BQ/782:787 | No text annotation | homologous J5_8C3A_003 NA | |
| J5_6SV4_019 | 1/BQ/1906:1914, 1/BQ/1938:1939, 1/BQ/2109:2110, 1/BQ/2114:2122, 1/BQ/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_6SV4_022 | 1/YQ/20:22, 1/YS/35:42, 1/YS/102:107, 1/YS/115:116, 1/YS/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_6SV4_023 | 1/YQ/658:663, 1/YQ/799:802, 1/YQ/941:944, 1/YQ/1375:1376, 1/YQ/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6SV4_024 | 1/YQ/675:678, 1/YQ/702:706, 1/YQ/713:721, 1/YQ/749:751, 1/YQ/782:787 | No text annotation | homologous J5_8C3A_003 NA | |
| J5_6SV4_025 | 1/YQ/1906:1914, 1/YQ/1938:1939, 1/YQ/2109:2110, 1/YQ/2114:2122, 1/YQ/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_6SV4_026 | 1/YQ/2399:2406, 1/YQ/2815:2823, 1/YQ/2867:2876, 1/YQ/2951:2957, 1/YQ/2975:2980 | No text annotation | ||
| J5_6SV4_027 | 1/YQ/2416:2419, 1/YQ/2611:2614, 1/YQ/2627:2628, 1/YQ/2650:2651, 1/YQ/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_6SV4_034 | 1/ZQ/20:22, 1/ZS/35:42, 1/ZS/102:107, 1/ZS/115:116, 1/ZS/137:139 | No text annotation | homologous J5_8CRE_001 NA | |
| J5_6SV4_029 | 1/ZQ/658:663, 1/ZQ/799:802, 1/ZQ/941:944, 1/ZQ/1375:1376, 1/ZQ/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_6SV4_030 | 1/ZQ/675:678, 1/ZQ/702:706, 1/ZQ/713:721, 1/ZQ/749:751, 1/ZQ/782:787 | No text annotation | homologous J5_8C3A_003 NA | |
| J5_6SV4_031 | 1/ZQ/1906:1914, 1/ZQ/1938:1939, 1/ZQ/2109:2110, 1/ZQ/2114:2122, 1/ZQ/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_6SV4_032 | 1/ZQ/2399:2406, 1/ZQ/2815:2823, 1/ZQ/2867:2876, 1/ZQ/2951:2957, 1/ZQ/2975:2980 | No text annotation | ||
| J5_6SV4_033 | 1/ZQ/2416:2419, 1/ZQ/2611:2614, 1/ZQ/2627:2628, 1/ZQ/2650:2651, 1/ZQ/2798:2804 | No text annotation | homologous J5_8C3A_006 NA | |
| J6_6SV4_001 | 1/BQ/22:27, 1/BQ/58:68, 1/BQ/75:79, 1/BQ/106:110, 1/BQ/321:331, 1/BS/32:35 | No text annotation | ||
| J6_6SV4_002 | 1/BQ/2416:2419, 1/BQ/2611:2614, 1/BQ/2627:2628, 1/BQ/2650:2653, 1/BQ/2754:2765, 1/BQ/2793:2804 | No text annotation | ||
| J6_6SV4_003 | 1/YQ/22:27, 1/YQ/58:68, 1/YQ/75:79, 1/YQ/106:110, 1/YQ/321:331, 1/YS/32:35 | No text annotation | ||
| J6_6SV4_004 | 1/YQ/2416:2419, 1/YQ/2611:2614, 1/YQ/2627:2628, 1/YQ/2650:2653, 1/YQ/2754:2765, 1/YQ/2793:2804 | No text annotation | ||
| J6_6SV4_005 | 1/ZQ/22:27, 1/ZQ/58:68, 1/ZQ/75:79, 1/ZQ/106:110, 1/ZQ/321:331, 1/ZS/32:35 | No text annotation | ||
| J6_6SV4_006 | 1/ZQ/2416:2419, 1/ZQ/2611:2614, 1/ZQ/2627:2628, 1/ZQ/2650:2653, 1/ZQ/2754:2765, 1/ZQ/2793:2804 | No text annotation | ||
| J7_6SV4_002 | 1/YQ/949:954, 1/YQ/967:968, 1/YQ/1114:1117, 1/YQ/1141:1146, 1/YQ/1157:1161, 1/YQ/1338:1339, 1/YQ/1365:1370 | No text annotation | ||
| J7_6SV4_003 | 1/ZQ/949:954, 1/ZQ/967:968, 1/ZQ/1114:1117, 1/ZQ/1141:1146, 1/ZQ/1157:1161, 1/ZQ/1338:1339, 1/ZQ/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6SV4_001 | No text annotation | ||
| J3_6SV4_093 | No text annotation | ||
| J3_6SV4_005 | No text annotation | ||
| J3_6SV4_095 | No text annotation | ||
| J3_6SV4_096 | No text annotation | ||
| J3_6SV4_007 | No text annotation | ||
| J3_6SV4_009 | No text annotation | ||
| J3_6SV4_130 | No text annotation | ||
| J3_6SV4_010 | No text annotation | ||
| J3_6SV4_012 | No text annotation | ||
| J3_6SV4_024 | No text annotation | ||
| J3_6SV4_102 | No text annotation | ||
| J3_6SV4_036 | No text annotation | ||
| J3_6SV4_042 | No text annotation | ||
| J3_6SV4_044 | No text annotation | ||
| J3_6SV4_045 | No text annotation | ||
| J3_6SV4_109 | No text annotation | ||
| J3_6SV4_050 | No text annotation | ||
| J3_6SV4_111 | No text annotation | ||
| J3_6SV4_053 | No text annotation | ||
| J3_6SV4_054 | No text annotation | ||
| J3_6SV4_056 | No text annotation | ||
| J3_6SV4_063 | No text annotation | ||
| J3_6SV4_081 | No text annotation | ||
| J3_6SV4_128 | No text annotation | ||
| J3_6SV4_129 | No text annotation | ||
| J4_6SV4_006 | No text annotation | ||
| J4_6SV4_009 | No text annotation | ||
| J4_6SV4_012 | No text annotation | ||
| J4_6SV4_013 | No text annotation | ||
| J4_6SV4_014 | No text annotation | ||
| J4_6SV4_015 | No text annotation | ||
| J4_6SV4_016 | No text annotation | ||
| J4_6SV4_017 | No text annotation | ||
| J4_6SV4_042 | tRNA junction | ||
| J4_6SV4_044 | No text annotation | ||
| J5_6SV4_013 | No text annotation | ||
| J5_6SV4_014 | No text annotation | ||
| J5_6SV4_020 | No text annotation | ||
| J5_6SV4_021 | No text annotation | ||
| J5_6SV4_028 | No text annotation | ||
| J7_6SV4_001 | No text annotation |
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