HL_6SV4_012

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6SV4|1|2|A|452, 6SV4|1|2|U|454, 6SV4|1|2|C|455

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_012 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3152

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6SV4|1|2|U|450
6SV4|1|2|A|451
6SV4|1|2|A|452
6SV4|1|2|U|453
6SV4|1|2|U|454
6SV4|1|2|C|455
6SV4|1|2|A|456

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain d

40S ribosomal protein S24-A