HL_6SV4_031
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUCAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_031 not in the Motif Atlas
- Geometric match to HL_5J7L_026
- Geometric discrepancy: 0.2069
- The information below is about HL_5J7L_026
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_93535.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6SV4|1|2|U|1396
6SV4|1|2|U|1397
6SV4|1|2|U|1398
6SV4|1|2|C|1399
6SV4|1|2|A|1400
6SV4|1|2|A|1401
6SV4|1|2|G|1402
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain G
- 40S ribosomal protein S17-B
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