HL_6SV4_049

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_049 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.3035

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53014.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6SV4|1|2b|C|491
6SV4|1|2b|A|492
6SV4|1|2b|U|493
6SV4|1|2b|U|494
6SV4|1|2b|C|495
6SV4|1|2b|G|496

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S28-B