HL_6SV4_054

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6SV4|1|2b|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_054 not in the Motif Atlas

Geometric match to HL_4V88_203

Geometric discrepancy: 0.2258

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6SV4|1|2b|U|764
6SV4|1|2b|G|765
6SV4|1|2b|U|766
6SV4|1|2b|U|767
6SV4|1|2b|C|768
6SV4|1|2b|A|769
6SV4|1|2b|A|770
6SV4|1|2b|A|771
6SV4|1|2b|G|772

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Wb

40S ribosomal protein S9-A

Chain db

40S ribosomal protein S24-A