HL_6SV4_083

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUGAGAAACGGC

Length

14 nucleotides

Bulged bases

6SV4|1|2c|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|G|392
6SV4|1|2c|C|393
6SV4|1|2c|C|394
6SV4|1|2c|U|395
6SV4|1|2c|G|396
6SV4|1|2c|A|397
6SV4|1|2c|G|398
6SV4|1|2c|A|399
6SV4|1|2c|A|400
6SV4|1|2c|A|401
6SV4|1|2c|C|402
6SV4|1|2c|G|403
6SV4|1|2c|G|404
6SV4|1|2c|C|405

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Sc

40S ribosomal protein S4-A

Chain Tc

40S ribosomal protein S6-A

Chain Vc

40S ribosomal protein S8-A

Chain dc

40S ribosomal protein S24-A