HL_6SV4_087

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_087 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.3247

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6SV4|1|2c|A|520
6SV4|1|2c|A|521
6SV4|1|2c|U|522
6SV4|1|2c|G|523
6SV4|1|2c|U|524
6SV4|1|2c|A|525
6SV4|1|2c|A|526
6SV4|1|2c|A|527
6SV4|1|2c|U|528
6SV4|1|2c|A|529
6SV4|1|2c|C|530
6SV4|1|2c|C|531
6SV4|1|2c|U|532

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Wc

40S ribosomal protein S9-A

Chain dc

40S ribosomal protein S24-A