HL_6SV4_089

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCCGGUCGGAUUUCC

Length

16 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|G|651
6SV4|1|2c|G|652
6SV4|1|2c|C|653
6SV4|1|2c|C|654
6SV4|1|2c|G|655
6SV4|1|2c|G|656
6SV4|1|2c|U|657
6SV4|1|2c|C|658
6SV4|1|2c|G|676
6SV4|1|2c|G|677
6SV4|1|2c|A|678
6SV4|1|2c|U|679
6SV4|1|2c|U|680
6SV4|1|2c|U|681
6SV4|1|2c|C|682
6SV4|1|2c|C|683

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Uc

40S ribosomal protein S7-A

Chain fb

40S ribosomal protein S27-A