HL_6SV4_090

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

6SV4|1|2c|U|718, 6SV4|1|2c|U|719, 6SV4|1|2c|U|721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|C|716
6SV4|1|2c|C|717
6SV4|1|2c|U|718
6SV4|1|2c|U|719
6SV4|1|2c|G|720
6SV4|1|2c|U|721
6SV4|1|2c|G|722

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain XN

60S ribosomal protein L27-A

Chain XY

60S ribosomal protein L30