HL_6SV4_091

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGUUCAAAGC

Length

11 nucleotides

Bulged bases

6SV4|1|2c|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|G|763
6SV4|1|2c|U|764
6SV4|1|2c|G|765
6SV4|1|2c|U|766
6SV4|1|2c|U|767
6SV4|1|2c|C|768
6SV4|1|2c|A|769
6SV4|1|2c|A|770
6SV4|1|2c|A|771
6SV4|1|2c|G|772
6SV4|1|2c|C|773

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Sc

40S ribosomal protein S4-A

Chain Wc

40S ribosomal protein S9-A

Chain YQ

Large subunit ribosomal RNA; LSU rRNA

Chain dc

40S ribosomal protein S24-A