HL_6SV4_092

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGUAUUGC

Length

9 nucleotides

Bulged bases

6SV4|1|2c|U|779

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_092 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2586

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|2c|G|776
6SV4|1|2c|C|777
6SV4|1|2c|G|778
6SV4|1|2c|U|779
6SV4|1|2c|A|780
6SV4|1|2c|U|781
6SV4|1|2c|U|782
6SV4|1|2c|G|783
6SV4|1|2c|C|784

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Sc

40S ribosomal protein S4-A

Chain YQ

Large subunit ribosomal RNA; LSU rRNA

Chain dc

40S ribosomal protein S24-A