HL_6SV4_097

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUUUUUAAUGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|U|1054
6SV4|1|2c|U|1055
6SV4|1|2c|U|1056
6SV4|1|2c|U|1057
6SV4|1|2c|U|1058
6SV4|1|2c|U|1059
6SV4|1|2c|U|1060
6SV4|1|2c|A|1061
6SV4|1|2c|A|1062
6SV4|1|2c|U|1063
6SV4|1|2c|G|1064
6SV4|1|2c|A|1065

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Gc

40S ribosomal protein S17-B

Chain Qc

40S ribosomal protein S1-A

Chain fc

40S ribosomal protein S27-A