HL_6SV4_102

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_102 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.2705

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SV4|1|2c|A|1296
6SV4|1|2c|G|1297
6SV4|1|2c|U|1298
6SV4|1|2c|G|1299
6SV4|1|2c|A|1300
6SV4|1|2c|U|1301

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Pc

40S ribosomal protein S0-A

Chain Rc

40S ribosomal protein S2

Chain ac

40S ribosomal protein S21-A