HL_6SV4_108
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 6SV4|1|2c|A|1597, 6SV4|1|2c|G|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_108 not in the Motif Atlas
- Homologous match to HL_8P9A_223
- Geometric discrepancy: 0.5426
- The information below is about HL_8P9A_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|2c|G|1594
6SV4|1|2c|U|1595
6SV4|1|2c|C|1596
6SV4|1|2c|A|1597
6SV4|1|2c|U|1598
6SV4|1|2c|C|1599
6SV4|1|2c|A|1600
6SV4|1|2c|G|1601
6SV4|1|2c|C|1602
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Fc
- 40S ribosomal protein S16-A
- Chain Ic
- 40S ribosomal protein S19-A
- Chain Jc
- 40S ribosomal protein S20
- Chain Mc
- 40S ribosomal protein S29-A
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