HL_6SV4_115

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6SV4|1|BQ|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_115 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.151

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6SV4|1|BQ|U|194
6SV4|1|BQ|U|195
6SV4|1|BQ|G|196
6SV4|1|BQ|G|197
6SV4|1|BQ|A|198
6SV4|1|BQ|A|199
6SV4|1|BQ|C|200
6SV4|1|BQ|A|201

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AK

60S ribosomal protein L26-A

Chain BE

60S ribosomal protein L4-A

Chain BG

60S ribosomal protein L32