HL_6SV4_126

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_126 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.1441

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SV4|1|BQ|U|707
6SV4|1|BQ|G|708
6SV4|1|BQ|A|709
6SV4|1|BQ|A|710
6SV4|1|BQ|A|711
6SV4|1|BQ|G|712

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L36-A

Chain AJ

60S ribosomal protein L13-A

Chain AR

60S ribosomal protein L28

Chain BB

60S ribosomal protein L18-A