HL_6SV4_163

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUCAUUU

Length

8 nucleotides

Bulged bases

6SV4|1|BQ|U|2538, 6SV4|1|BQ|C|2539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|BQ|A|2536
6SV4|1|BQ|U|2537
6SV4|1|BQ|U|2538
6SV4|1|BQ|C|2539
6SV4|1|BQ|A|2540
6SV4|1|BQ|U|2541
6SV4|1|BQ|U|2542
6SV4|1|BQ|U|2543

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BN

60S ribosomal protein L34-A

Chain Sb

40S ribosomal protein S4-A