HL_6SV4_178

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6SV4|1|BQ|G|3116, 6SV4|1|BQ|C|3117

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_178 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.2745

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6SV4|1|BQ|C|3110
6SV4|1|BQ|U|3111
6SV4|1|BQ|G|3112
6SV4|1|BQ|A|3113
6SV4|1|BQ|A|3114
6SV4|1|BQ|C|3115
6SV4|1|BQ|G|3116
6SV4|1|BQ|C|3117
6SV4|1|BQ|C|3118
6SV4|1|BQ|U|3119
6SV4|1|BQ|C|3120
6SV4|1|BQ|U|3121
6SV4|1|BQ|A|3122
6SV4|1|BQ|A|3123
6SV4|1|BQ|G|3124

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain AU

60S ribosomal protein L16-A