HL_6SV4_211

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCGAAAUGA

Length

9 nucleotides

Bulged bases

6SV4|1|YQ|A|1025, 6SV4|1|YQ|U|1028

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_211 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2583

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|YQ|U|1022
6SV4|1|YQ|C|1023
6SV4|1|YQ|G|1024
6SV4|1|YQ|A|1025
6SV4|1|YQ|A|1026
6SV4|1|YQ|A|1027
6SV4|1|YQ|U|1028
6SV4|1|YQ|G|1029
6SV4|1|YQ|A|1030

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain Eb

40S ribosomal protein S15

Chain XG

60S ribosomal protein L11-A