HL_6SV4_213

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

6SV4|1|YQ|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_213 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.1093

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SV4|1|YQ|G|1126
6SV4|1|YQ|G|1127
6SV4|1|YQ|U|1128
6SV4|1|YQ|A|1129
6SV4|1|YQ|A|1130
6SV4|1|YQ|G|1131
6SV4|1|YQ|C|1132

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XV

60S ribosomal protein L29

Chain YD

60S ribosomal protein L10