HL_6SV4_217
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUAUGAUG
- Length
- 8 nucleotides
- Bulged bases
- 6SV4|1|YQ|U|1348, 6SV4|1|YQ|A|1352, 6SV4|1|YQ|U|1353, 6SV4|1|YQ|G|1354, 6SV4|1|YQ|U|1356
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SV4_217 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.2667
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_56334.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 16
Unit IDs
6SV4|1|YQ|U|1347
6SV4|1|YQ|U|1348
6SV4|1|YQ|A|1352
6SV4|1|YQ|U|1353
6SV4|1|YQ|G|1354
6SV4|1|YQ|A|1355
6SV4|1|YQ|U|1356
6SV4|1|YQ|G|1357
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain YB
- 60S ribosomal protein L18-A
- Chain YE
- 60S ribosomal protein L4-A
- Chain YG
- 60S ribosomal protein L32
- Chain YM
- 60S ribosomal protein L6-A
Coloring options: