HL_6SV4_225

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

6SV4|1|YQ|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_225 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1103

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6SV4|1|YQ|G|1680
6SV4|1|YQ|U|1681
6SV4|1|YQ|U|1682
6SV4|1|YQ|A|1683
6SV4|1|YQ|U|1684
6SV4|1|YQ|C|1685
6SV4|1|YQ|U|1686
6SV4|1|YQ|U|1687
6SV4|1|YQ|U|1688

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain YF

60S ribosomal protein L19-A

Chain YL

60S ribosomal protein L22-A