HL_6SV4_227

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6SV4|1|YQ|C|1761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SV4_227 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2966

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6SV4|1|YQ|C|1759
6SV4|1|YQ|A|1760
6SV4|1|YQ|C|1761
6SV4|1|YQ|C|1762
6SV4|1|YQ|U|1763
6SV4|1|YQ|U|1764
6SV4|1|YQ|U|1765
6SV4|1|YQ|G|1766

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain YF

60S ribosomal protein L19-A

Chain YL

60S ribosomal protein L22-A